Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | FI644_RS11340 | Genome accession | NZ_CP041305 |
| Coordinates | 2217925..2218284 (+) | Length | 119 a.a. |
| NCBI ID | WP_053478582.1 | Uniprot ID | - |
| Organism | Cytobacillus solani strain 5L6 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2212925..2223284
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FI644_RS11310 | - | 2214149..2214976 (+) | 828 | WP_053478576.1 | flagellar hook-basal body protein | - |
| FI644_RS11315 | - | 2215004..2215846 (+) | 843 | WP_053478577.1 | flagellar hook-basal body protein | - |
| FI644_RS11320 | - | 2215871..2216143 (+) | 273 | WP_053478578.1 | DNA-directed RNA polymerase subunit beta | - |
| FI644_RS11325 | fabZ | 2216284..2216706 (+) | 423 | WP_053478579.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| FI644_RS11330 | - | 2216868..2217170 (+) | 303 | WP_053478580.1 | hypothetical protein | - |
| FI644_RS11335 | - | 2217201..2217635 (-) | 435 | WP_053478581.1 | YwpF family protein | - |
| FI644_RS11340 | ssbB | 2217925..2218284 (+) | 360 | WP_053478582.1 | single-stranded DNA-binding protein | Machinery gene |
| FI644_RS11345 | - | 2218290..2218469 (+) | 180 | WP_142108324.1 | hypothetical protein | - |
| FI644_RS11350 | - | 2219181..2222000 (-) | 2820 | WP_053478846.1 | DEAD/DEAH box helicase | - |
Sequence
Protein
Download Length: 119 a.a. Molecular weight: 13483.23 Da Isoelectric Point: 9.4327
>NTDB_id=371154 FI644_RS11340 WP_053478582.1 2217925..2218284(+) (ssbB) [Cytobacillus solani strain 5L6]
MINQVTLVGRLTKDPELKRTAEGTPVTNVTLAVNRHYRNQQGEIDADFVQCTLWRKVAENTSRYCRKGSLVGITGRIQTS
HYENQAGKRVYVTEVWADSVKFLDQKKPDEAYAPAGREV
MINQVTLVGRLTKDPELKRTAEGTPVTNVTLAVNRHYRNQQGEIDADFVQCTLWRKVAENTSRYCRKGSLVGITGRIQTS
HYENQAGKRVYVTEVWADSVKFLDQKKPDEAYAPAGREV
Nucleotide
Download Length: 360 bp
>NTDB_id=371154 FI644_RS11340 WP_053478582.1 2217925..2218284(+) (ssbB) [Cytobacillus solani strain 5L6]
ATGATTAATCAAGTAACACTCGTTGGCAGGTTAACCAAGGACCCCGAGCTGAAACGGACAGCGGAAGGAACCCCCGTTAC
AAATGTGACCCTTGCTGTTAATCGTCATTATCGAAATCAGCAAGGGGAAATTGATGCAGACTTTGTTCAATGCACACTTT
GGAGAAAGGTAGCAGAGAATACCTCAAGATACTGCCGAAAAGGCTCCCTAGTTGGAATTACCGGCAGAATACAGACAAGT
CATTATGAAAATCAAGCAGGTAAACGAGTCTACGTAACTGAAGTATGGGCAGATAGTGTCAAGTTTCTTGATCAAAAAAA
GCCGGATGAAGCGTATGCACCAGCAGGGAGAGAGGTGTAG
ATGATTAATCAAGTAACACTCGTTGGCAGGTTAACCAAGGACCCCGAGCTGAAACGGACAGCGGAAGGAACCCCCGTTAC
AAATGTGACCCTTGCTGTTAATCGTCATTATCGAAATCAGCAAGGGGAAATTGATGCAGACTTTGTTCAATGCACACTTT
GGAGAAAGGTAGCAGAGAATACCTCAAGATACTGCCGAAAAGGCTCCCTAGTTGGAATTACCGGCAGAATACAGACAAGT
CATTATGAAAATCAAGCAGGTAAACGAGTCTACGTAACTGAAGTATGGGCAGATAGTGTCAAGTTTCTTGATCAAAAAAA
GCCGGATGAAGCGTATGCACCAGCAGGGAGAGAGGTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
63.964 |
93.277 |
0.597 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.944 |
89.916 |
0.521 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.909 |
92.437 |
0.471 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
47.17 |
89.076 |
0.42 |
| ssbA | Streptococcus mutans UA159 |
43.396 |
89.076 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.453 |
89.076 |
0.378 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.453 |
89.076 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
41.509 |
89.076 |
0.37 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
41.509 |
89.076 |
0.37 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
41.509 |
89.076 |
0.37 |
| ssbB/cilA | Streptococcus mitis SK321 |
41.509 |
89.076 |
0.37 |