Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FKV23_RS13250 Genome accession   NZ_CP041242
Coordinates   2995856..2997058 (+) Length   400 a.a.
NCBI ID   WP_407067681.1    Uniprot ID   -
Organism   Marilutibacter alkalisoli strain SJ-36     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2990856..3002058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKV23_RS13220 (FKV23_13220) - 2991148..2991402 (+) 255 WP_208543295.1 antitoxin of toxin-antitoxin stability system -
  FKV23_RS13225 (FKV23_13225) - 2991399..2991689 (+) 291 WP_141624268.1 type II toxin-antitoxin system RelE/ParE family toxin -
  FKV23_RS17840 (FKV23_13230) - 2991742..2992026 (-) 285 WP_407067626.1 addiction module protein -
  FKV23_RS17385 - 2992370..2992469 (+) 100 Protein_2629 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FKV23_RS17845 - 2993076..2993177 (+) 102 Protein_2630 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FKV23_RS13245 (FKV23_13245) pilB 2993751..2995472 (+) 1722 WP_141624272.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FKV23_RS13250 (FKV23_13250) pilC 2995856..2997058 (+) 1203 WP_407067681.1 type II secretion system F family protein Machinery gene
  FKV23_RS13255 (FKV23_13255) pilD 2997068..2997931 (+) 864 WP_141624274.1 A24 family peptidase Machinery gene
  FKV23_RS13260 (FKV23_13260) coaE 2997953..2998603 (+) 651 WP_141624275.1 dephospho-CoA kinase -
  FKV23_RS13265 (FKV23_13265) - 2998633..2999613 (-) 981 WP_141624276.1 Nudix family hydrolase -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 43463.56 Da        Isoelectric Point: 9.8647

>NTDB_id=370775 FKV23_RS13250 WP_407067681.1 2995856..2997058(+) (pilC) [Marilutibacter alkalisoli strain SJ-36]
MAMFVWEGTDKRGVVMKGEQPAKNANMIRAELRRQGITPKVVKPKPKPLFGAAGRRVSPLDIAIFSRQIATMMKAGVPIV
GALEIIGNGNKNPRMQKMVNTIRSDVESGSSLSEAISKHPVQFDELYRNLVRAGESAGVLETVLDTVATYKENLEALKGK
IKKAMFYPAAVLAVALLVSAILLVFVIPTFEEVFQGFGADLPAFTQLVIGLSNFMVAWWWLILLIGTGAAVALIMVFKRS
PVFQHFVDRMLLKIPVLGEILHNSAIARFARTLGVTFKAGVPLVEALDSVAGATGNTVYEKAVYRIRDDVAVGFSVNMAM
KQVNLFPHMVVQMTAIGEEAGALDTMLFKVAEFYEQEVNNAVDALSSLLEPLIIVILGVLVGGMVVAMYLPIFKLAATIV

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=370775 FKV23_RS13250 WP_407067681.1 2995856..2997058(+) (pilC) [Marilutibacter alkalisoli strain SJ-36]
ATGGCCATGTTCGTCTGGGAGGGCACCGACAAGCGCGGCGTCGTGATGAAGGGCGAGCAGCCCGCCAAGAACGCGAACAT
GATCCGCGCCGAGCTGCGCCGCCAGGGCATCACCCCCAAGGTGGTCAAGCCCAAGCCCAAGCCGTTGTTCGGTGCCGCCG
GCAGACGCGTCAGCCCGCTCGACATCGCCATTTTCAGCCGCCAGATCGCGACCATGATGAAGGCCGGCGTGCCGATCGTC
GGCGCGCTGGAAATCATCGGCAACGGCAACAAGAATCCGCGCATGCAGAAGATGGTCAACACCATCCGCTCCGACGTGGA
AAGCGGCTCCTCGCTCAGCGAGGCGATCAGCAAGCACCCGGTGCAGTTCGACGAACTGTACCGGAACCTGGTCCGAGCCG
GCGAGTCGGCCGGCGTGCTGGAGACCGTGCTCGATACGGTCGCCACCTACAAGGAGAACCTGGAAGCGCTCAAGGGCAAG
ATCAAGAAGGCCATGTTCTACCCGGCCGCGGTGCTTGCGGTGGCCCTATTGGTCAGCGCGATCCTGCTGGTCTTCGTCAT
CCCTACCTTCGAGGAAGTATTCCAGGGCTTCGGCGCCGACCTGCCCGCCTTCACCCAACTGGTCATCGGCCTCAGCAACT
TCATGGTGGCCTGGTGGTGGCTGATCCTGCTGATCGGAACGGGCGCGGCGGTCGCGCTCATCATGGTGTTCAAGCGATCG
CCGGTCTTCCAGCACTTTGTCGATCGCATGCTGCTGAAGATTCCGGTGCTCGGCGAGATTCTGCATAACTCGGCGATCGC
GCGCTTTGCGCGTACGCTGGGCGTGACCTTCAAGGCCGGCGTACCGCTGGTGGAGGCGCTGGACAGCGTGGCCGGCGCCA
CCGGCAATACGGTCTACGAAAAGGCCGTGTACCGCATCCGCGACGACGTGGCGGTCGGCTTTTCGGTCAACATGGCCATG
AAGCAGGTCAACCTGTTCCCGCACATGGTGGTGCAGATGACCGCCATCGGCGAGGAGGCCGGCGCGCTCGACACCATGCT
GTTCAAGGTCGCCGAGTTCTACGAGCAGGAAGTCAACAACGCGGTCGATGCGCTGTCGAGCCTGCTGGAACCGCTGATCA
TCGTGATCCTCGGCGTGCTCGTCGGCGGCATGGTGGTGGCGATGTACCTGCCGATCTTCAAACTCGCCGCCACGATCGTC
TAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(269-391)

Type II secretion system (T2SS), protein F (T2SSF)

(65-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.408

99.25

0.54
  pilC Pseudomonas stutzeri DSM 10701

54.02

99.5

0.537
  pilC Acinetobacter baylyi ADP1

51.87

100

0.52
  pilC Acinetobacter baumannii D1279779

51

100

0.51
  pilG Neisseria meningitidis 44/76-A

45.226

99.5

0.45
  pilG Neisseria gonorrhoeae MS11

44.389

100

0.445
  pilC Vibrio campbellii strain DS40M4

42.172

99

0.418
  pilC Vibrio cholerae strain A1552

41.667

99

0.413
  pilC Thermus thermophilus HB27

38.084

100

0.388

Multiple sequence alignment