Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | FIU19_RS04235 | Genome accession | NZ_CP041010 |
| Coordinates | 758140..758565 (+) | Length | 141 a.a. |
| NCBI ID | WP_000934384.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain FDAARGOS_766 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 744561..793733 | 758140..758565 | within | 0 |
Gene organization within MGE regions
Location: 744561..793733
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIU19_RS04110 (FIU19_04110) | - | 744561..745487 (-) | 927 | WP_000757569.1 | glycerophosphodiester phosphodiesterase | - |
| FIU19_RS04115 (FIU19_04115) | - | 745726..745980 (+) | 255 | WP_001049150.1 | YlbG family protein | - |
| FIU19_RS04120 (FIU19_04120) | - | 745983..746372 (-) | 390 | WP_000814565.1 | hypothetical protein | - |
| FIU19_RS04125 (FIU19_04125) | rsmD | 746442..746984 (+) | 543 | WP_001263796.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| FIU19_RS04130 (FIU19_04130) | coaD | 746986..747468 (+) | 483 | WP_000401377.1 | pantetheine-phosphate adenylyltransferase | - |
| FIU19_RS04135 (FIU19_04135) | - | 747530..748669 (-) | 1140 | WP_000843611.1 | nucleotidyltransferase | - |
| FIU19_RS04140 (FIU19_04140) | - | 748796..749353 (+) | 558 | WP_000872158.1 | YceD family protein | - |
| FIU19_RS04150 (FIU19_04150) | rpmF | 749433..749606 (+) | 174 | WP_000290472.1 | 50S ribosomal protein L32 | - |
| FIU19_RS04155 (FIU19_04155) | - | 749723..751108 (-) | 1386 | WP_023487067.1 | recombinase family protein | - |
| FIU19_RS04160 (FIU19_04160) | - | 751315..751995 (-) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| FIU19_RS04165 (FIU19_04165) | - | 752027..752491 (-) | 465 | WP_023487066.1 | toxin-antitoxin system toxin component | - |
| FIU19_RS04170 (FIU19_04170) | - | 752504..752818 (-) | 315 | WP_000333630.1 | helix-turn-helix domain-containing protein | - |
| FIU19_RS04175 (FIU19_04175) | - | 752970..753206 (+) | 237 | WP_001121027.1 | helix-turn-helix domain-containing protein | - |
| FIU19_RS04180 (FIU19_04180) | - | 753220..753996 (+) | 777 | WP_001148544.1 | Rha family transcriptional regulator | - |
| FIU19_RS04185 (FIU19_04185) | - | 754022..754465 (+) | 444 | WP_023487065.1 | hypothetical protein | - |
| FIU19_RS04190 (FIU19_04190) | - | 754480..754623 (+) | 144 | WP_000939498.1 | hypothetical protein | - |
| FIU19_RS04195 (FIU19_04195) | - | 754613..754822 (-) | 210 | WP_000642492.1 | hypothetical protein | - |
| FIU19_RS04200 (FIU19_04200) | - | 755262..755447 (+) | 186 | WP_000933363.1 | helix-turn-helix domain-containing protein | - |
| FIU19_RS04205 (FIU19_04205) | - | 755449..756201 (+) | 753 | WP_023487064.1 | phage antirepressor KilAC domain-containing protein | - |
| FIU19_RS04210 (FIU19_04210) | - | 756368..756598 (-) | 231 | WP_000395455.1 | hypothetical protein | - |
| FIU19_RS15605 | - | 756648..756785 (+) | 138 | WP_000230552.1 | hypothetical protein | - |
| FIU19_RS04215 (FIU19_04215) | - | 756778..756939 (+) | 162 | WP_000066026.1 | DUF1270 family protein | - |
| FIU19_RS04220 (FIU19_04220) | - | 757033..757293 (+) | 261 | WP_000291076.1 | DUF1108 family protein | - |
| FIU19_RS04225 (FIU19_04225) | - | 757303..757524 (+) | 222 | WP_000815403.1 | DUF2483 family protein | - |
| FIU19_RS04230 (FIU19_04230) | - | 757517..758140 (+) | 624 | WP_000139720.1 | DUF1071 domain-containing protein | - |
| FIU19_RS04235 (FIU19_04235) | ssbA | 758140..758565 (+) | 426 | WP_000934384.1 | single-stranded DNA-binding protein | Machinery gene |
| FIU19_RS04240 (FIU19_04240) | - | 758576..759127 (+) | 552 | WP_001004506.1 | NUMOD4 domain-containing protein | - |
| FIU19_RS04245 (FIU19_04245) | - | 759128..759802 (+) | 675 | WP_015445893.1 | putative HNHc nuclease | - |
| FIU19_RS04250 (FIU19_04250) | - | 759795..760550 (+) | 756 | WP_001037657.1 | DnaD domain protein | - |
| FIU19_RS04255 (FIU19_04255) | - | 760550..760906 (+) | 357 | WP_001132243.1 | hypothetical protein | - |
| FIU19_RS04260 (FIU19_04260) | - | 760903..762144 (+) | 1242 | WP_023180135.1 | DnaB helicase C-terminal domain-containing protein | - |
| FIU19_RS04265 (FIU19_04265) | - | 762141..762356 (+) | 216 | WP_001024405.1 | hypothetical protein | - |
| FIU19_RS04270 (FIU19_04270) | - | 762360..762581 (+) | 222 | WP_001123684.1 | DUF3269 family protein | - |
| FIU19_RS04275 (FIU19_04275) | - | 762591..762998 (+) | 408 | WP_020808008.1 | RusA family crossover junction endodeoxyribonuclease | - |
| FIU19_RS04280 (FIU19_04280) | - | 762998..763183 (+) | 186 | WP_001187230.1 | DUF3113 family protein | - |
| FIU19_RS04290 (FIU19_04290) | - | 763269..763523 (+) | 255 | WP_000022735.1 | DUF3310 domain-containing protein | - |
| FIU19_RS04295 (FIU19_04295) | - | 763523..763771 (+) | 249 | WP_012068339.1 | SAV1978 family virulence-associated passenger protein | - |
| FIU19_RS04300 (FIU19_04300) | - | 763784..764185 (+) | 402 | WP_000695762.1 | hypothetical protein | - |
| FIU19_RS04305 (FIU19_04305) | - | 764182..764529 (+) | 348 | WP_000979209.1 | YopX family protein | - |
| FIU19_RS04310 (FIU19_04310) | - | 764526..764834 (+) | 309 | WP_000144710.1 | hypothetical protein | - |
| FIU19_RS04315 (FIU19_04315) | - | 764827..765081 (+) | 255 | WP_001614814.1 | DUF1024 family protein | - |
| FIU19_RS04320 (FIU19_04320) | - | 765068..765238 (+) | 171 | WP_001614817.1 | hypothetical protein | - |
| FIU19_RS04325 (FIU19_04325) | - | 765231..765767 (+) | 537 | WP_023487063.1 | dUTPase | - |
| FIU19_RS04330 (FIU19_04330) | - | 765804..765977 (+) | 174 | WP_001209216.1 | hypothetical protein | - |
| FIU19_RS04335 (FIU19_04335) | - | 765994..766230 (+) | 237 | WP_000195761.1 | DUF1381 domain-containing protein | - |
| FIU19_RS04340 (FIU19_04340) | - | 766255..766491 (+) | 237 | WP_000483477.1 | hypothetical protein | - |
| FIU19_RS04345 (FIU19_04345) | rinB | 766484..766657 (+) | 174 | WP_047216536.1 | transcriptional activator RinB | - |
| FIU19_RS04350 (FIU19_04350) | - | 766658..767059 (+) | 402 | WP_000286968.1 | hypothetical protein | - |
| FIU19_RS04360 (FIU19_04360) | - | 767412..767906 (+) | 495 | WP_000594088.1 | terminase small subunit | - |
| FIU19_RS04365 (FIU19_04365) | - | 767899..769122 (+) | 1224 | WP_001037577.1 | PBSX family phage terminase large subunit | - |
| FIU19_RS04370 (FIU19_04370) | - | 769119..770543 (+) | 1425 | WP_023487061.1 | phage portal protein | - |
| FIU19_RS04375 (FIU19_04375) | - | 770512..771465 (+) | 954 | WP_000184130.1 | phage head morphogenesis protein | - |
| FIU19_RS04380 (FIU19_04380) | - | 771467..771667 (+) | 201 | WP_033841232.1 | hypothetical protein | - |
| FIU19_RS04385 (FIU19_04385) | - | 771770..772354 (+) | 585 | WP_001019224.1 | DUF4355 domain-containing protein | - |
| FIU19_RS04390 (FIU19_04390) | - | 772371..773285 (+) | 915 | WP_000235168.1 | phage major capsid protein | - |
| FIU19_RS15610 | - | 773297..773440 (+) | 144 | WP_000002931.1 | hypothetical protein | - |
| FIU19_RS04395 (FIU19_04395) | - | 773446..773796 (+) | 351 | WP_023487059.1 | head completion protein | - |
| FIU19_RS04400 (FIU19_04400) | - | 773808..774143 (+) | 336 | WP_000483041.1 | phage head closure protein | - |
| FIU19_RS04405 (FIU19_04405) | - | 774130..774537 (+) | 408 | WP_001151323.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| FIU19_RS04410 (FIU19_04410) | - | 774550..774975 (+) | 426 | WP_000270190.1 | DUF3168 domain-containing protein | - |
| FIU19_RS04415 (FIU19_04415) | - | 774976..775533 (+) | 558 | WP_000057582.1 | tail protein | - |
| FIU19_RS04420 (FIU19_04420) | - | 775600..776106 (+) | 507 | WP_000134337.1 | tail assembly chaperone | - |
| FIU19_RS04425 (FIU19_04425) | - | 776151..776435 (+) | 285 | WP_000880587.1 | hypothetical protein | - |
| FIU19_RS04430 (FIU19_04430) | - | 776439..779324 (+) | 2886 | WP_023487058.1 | phage tape measure protein | - |
| FIU19_RS04435 (FIU19_04435) | - | 779339..780280 (+) | 942 | WP_140045513.1 | phage tail domain-containing protein | - |
| FIU19_RS04440 (FIU19_04440) | - | 780291..782177 (+) | 1887 | WP_015984523.1 | SGNH/GDSL hydrolase family protein | - |
| FIU19_RS04445 (FIU19_04445) | - | 782190..784088 (+) | 1899 | WP_023487057.1 | hypothetical protein | - |
| FIU19_RS04450 (FIU19_04450) | - | 784088..785911 (+) | 1824 | WP_023487056.1 | phage baseplate upper protein | - |
| FIU19_RS04455 (FIU19_04455) | - | 785911..786288 (+) | 378 | WP_000705893.1 | DUF2977 domain-containing protein | - |
| FIU19_RS04460 (FIU19_04460) | - | 786292..786465 (+) | 174 | WP_001790193.1 | XkdX family protein | - |
| FIU19_RS04465 (FIU19_04465) | - | 786506..786805 (+) | 300 | WP_023487055.1 | DUF2951 domain-containing protein | - |
| FIU19_RS04470 (FIU19_04470) | - | 786942..788816 (+) | 1875 | WP_023487054.1 | glucosaminidase domain-containing protein | - |
| FIU19_RS04475 (FIU19_04475) | - | 788829..790067 (+) | 1239 | WP_023487053.1 | BppU family phage baseplate upper protein | - |
| FIU19_RS04480 (FIU19_04480) | - | 790072..790467 (+) | 396 | WP_000398873.1 | hypothetical protein | - |
| FIU19_RS04485 (FIU19_04485) | - | 790523..790960 (+) | 438 | WP_000354132.1 | phage holin | - |
| FIU19_RS04490 (FIU19_04490) | - | 790941..792386 (+) | 1446 | WP_001148136.1 | SH3 domain-containing protein | - |
| FIU19_RS04495 (FIU19_04495) | - | 793052..793363 (+) | 312 | WP_000344116.1 | DUF3467 domain-containing protein | - |
| FIU19_RS04500 (FIU19_04500) | - | 793350..793733 (+) | 384 | WP_001251276.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15784.48 Da Isoelectric Point: 8.4826
>NTDB_id=368767 FIU19_RS04235 WP_000934384.1 758140..758565(+) (ssbA) [Staphylococcus aureus strain FDAARGOS_766]
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=368767 FIU19_RS04235 WP_000934384.1 758140..758565(+) (ssbA) [Staphylococcus aureus strain FDAARGOS_766]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGATTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGATTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
73.729 |
83.688 |
0.617 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.603 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
75.177 |
0.44 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.844 |
100 |
0.418 |
| ssbA | Streptococcus mutans UA159 |
46.087 |
81.56 |
0.376 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.068 |
83.688 |
0.369 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.068 |
83.688 |
0.369 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.068 |
83.688 |
0.369 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.068 |
83.688 |
0.369 |