Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | FGY92_RS05975 | Genome accession | NZ_CP040732 |
| Coordinates | 1197944..1198255 (+) | Length | 103 a.a. |
| NCBI ID | WP_017176238.1 | Uniprot ID | - |
| Organism | Staphylococcus hominis strain S34-1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1192944..1203255
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGY92_RS05945 (FGY92_06015) | - | 1193725..1193928 (+) | 204 | WP_017176233.1 | YqgQ family protein | - |
| FGY92_RS05950 (FGY92_06020) | - | 1193925..1194911 (+) | 987 | WP_002449785.1 | ROK family glucokinase | - |
| FGY92_RS05955 (FGY92_06025) | - | 1194911..1195234 (+) | 324 | WP_017176234.1 | MTH1187 family thiamine-binding protein | - |
| FGY92_RS05960 (FGY92_06030) | - | 1195236..1195862 (+) | 627 | WP_017176235.1 | MBL fold metallo-hydrolase | - |
| FGY92_RS05965 (FGY92_06035) | comGA | 1195914..1196888 (+) | 975 | WP_049415532.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| FGY92_RS05970 (FGY92_06040) | comGB | 1196866..1197924 (+) | 1059 | WP_048681721.1 | competence type IV pilus assembly protein ComGB | - |
| FGY92_RS05975 (FGY92_06045) | comGC | 1197944..1198255 (+) | 312 | WP_017176238.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FGY92_RS05980 (FGY92_06050) | comGD | 1198245..1198679 (+) | 435 | WP_049382010.1 | competence type IV pilus minor pilin ComGD | - |
| FGY92_RS05985 (FGY92_06055) | - | 1198871..1199368 (+) | 498 | WP_017176240.1 | competence protein ComG | - |
| FGY92_RS05990 (FGY92_06065) | - | 1199533..1200042 (+) | 510 | WP_235063067.1 | shikimate kinase | - |
| FGY92_RS05995 (FGY92_06070) | gcvT | 1200237..1201328 (+) | 1092 | WP_017176243.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| FGY92_RS06000 (FGY92_06075) | gcvPA | 1201345..1202697 (+) | 1353 | WP_019835697.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 11400.52 Da Isoelectric Point: 9.1831
>NTDB_id=366834 FGY92_RS05975 WP_017176238.1 1197944..1198255(+) (comGC) [Staphylococcus hominis strain S34-1]
MKKFKNKLKAFTLIEMLLVLLIISVLLILIIPNIAKQMSHIQSTGCEAQVKMVNSQIEAYTLKHNRVPNSIEDLVTEGFI
KQGQSSCKSGETISIKNGEAVAE
MKKFKNKLKAFTLIEMLLVLLIISVLLILIIPNIAKQMSHIQSTGCEAQVKMVNSQIEAYTLKHNRVPNSIEDLVTEGFI
KQGQSSCKSGETISIKNGEAVAE
Nucleotide
Download Length: 312 bp
>NTDB_id=366834 FGY92_RS05975 WP_017176238.1 1197944..1198255(+) (comGC) [Staphylococcus hominis strain S34-1]
ATGAAAAAATTCAAAAATAAATTAAAAGCTTTTACTTTAATTGAGATGTTACTTGTACTATTAATAATTAGTGTTTTACT
CATTCTTATTATTCCGAATATAGCTAAACAAATGTCACATATTCAATCAACAGGATGTGAAGCACAAGTGAAAATGGTCA
ATAGTCAAATTGAAGCTTATACTTTAAAACATAATAGAGTTCCTAATTCTATTGAGGACTTAGTAACTGAAGGGTTTATA
AAACAAGGGCAATCATCTTGTAAGTCTGGAGAAACTATCAGTATTAAAAATGGAGAAGCAGTTGCAGAGTAA
ATGAAAAAATTCAAAAATAAATTAAAAGCTTTTACTTTAATTGAGATGTTACTTGTACTATTAATAATTAGTGTTTTACT
CATTCTTATTATTCCGAATATAGCTAAACAAATGTCACATATTCAATCAACAGGATGTGAAGCACAAGTGAAAATGGTCA
ATAGTCAAATTGAAGCTTATACTTTAAAACATAATAGAGTTCCTAATTCTATTGAGGACTTAGTAACTGAAGGGTTTATA
AAACAAGGGCAATCATCTTGTAAGTCTGGAGAAACTATCAGTATTAAAAATGGAGAAGCAGTTGCAGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus N315 |
79.412 |
99.029 |
0.786 |
| comGC | Staphylococcus aureus MW2 |
79.412 |
99.029 |
0.786 |
| comGC/cglC | Streptococcus mitis SK321 |
46.875 |
93.204 |
0.437 |
| comGC/cglC | Streptococcus pneumoniae D39 |
45.833 |
93.204 |
0.427 |
| comGC/cglC | Streptococcus pneumoniae R6 |
45.833 |
93.204 |
0.427 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
45.833 |
93.204 |
0.427 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
45.833 |
93.204 |
0.427 |
| comYC | Streptococcus mutans UA140 |
48.315 |
86.408 |
0.417 |
| comYC | Streptococcus mutans UA159 |
48.315 |
86.408 |
0.417 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
44.211 |
92.233 |
0.408 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
47.727 |
85.437 |
0.408 |
| comYC | Streptococcus suis isolate S10 |
46.512 |
83.495 |
0.388 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
48.193 |
80.583 |
0.388 |