Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FFU37_RS13425 Genome accession   NZ_CP040558
Coordinates   3009492..3010718 (+) Length   408 a.a.
NCBI ID   WP_138489699.1    Uniprot ID   -
Organism   Pseudoalteromonas distincta strain 16-SW-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3004492..3015718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFU37_RS13400 (FFU37_13400) pdhR 3004767..3005516 (-) 750 WP_002957764.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  FFU37_RS13405 (FFU37_13405) ampE 3005869..3006720 (-) 852 WP_138489696.1 beta-lactamase regulator AmpE -
  FFU37_RS13410 (FFU37_13410) ampD 3006734..3007288 (-) 555 WP_138489697.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FFU37_RS13415 (FFU37_13415) nadC 3007617..3008468 (+) 852 WP_138489698.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FFU37_RS13420 (FFU37_13420) - 3008952..3009416 (+) 465 WP_217496773.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FFU37_RS13425 (FFU37_13425) pilC 3009492..3010718 (+) 1227 WP_138489699.1 type II secretion system F family protein Machinery gene
  FFU37_RS13430 (FFU37_13430) pilD 3010881..3011774 (+) 894 WP_138490040.1 A24 family peptidase Machinery gene
  FFU37_RS13435 (FFU37_13435) coaE 3011776..3012417 (+) 642 WP_138489700.1 dephospho-CoA kinase -
  FFU37_RS13440 (FFU37_13440) pilB 3012544..3014220 (+) 1677 WP_138489701.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FFU37_RS13445 (FFU37_13445) yacG 3014331..3014561 (+) 231 WP_002957774.1 DNA gyrase inhibitor YacG -
  FFU37_RS13450 (FFU37_13450) - 3014635..3015123 (-) 489 WP_138489702.1 Spy/CpxP family protein refolding chaperone -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44353.49 Da        Isoelectric Point: 9.9125

>NTDB_id=365204 FFU37_RS13425 WP_138489699.1 3009492..3010718(+) (pilC) [Pseudoalteromonas distincta strain 16-SW-7]
MPKEAKKKLDTFQWVGVSARGKRLEGELTGNSIALVKAQLRKQGITPSKVKRKPKPLFGIQSAQKISPKDIALLTRQIAT
MLMAGVPLIQAIEMIGSGSTNKSVAKLVETIGDEVKAGQPLSTALRKHPRYFDDLYCDLVASGEQSGALDKIFDRVALYK
EKSEALKSKIKKAMFYPIAVLVVALIVTSILLIFVVPQFQDIFNGFGAELPAFTLFVISISEFMQAYWWMILIAIVAFGY
AFKEAKLRSLKLRDATDRAILKLPVIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILDIKLEVS
SGNQMNWAMRNSKIFPDMVIQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGLIIAMYLP
IFQLGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=365204 FFU37_RS13425 WP_138489699.1 3009492..3010718(+) (pilC) [Pseudoalteromonas distincta strain 16-SW-7]
ATGCCTAAAGAAGCAAAGAAAAAATTAGATACTTTTCAATGGGTTGGTGTCAGCGCCCGCGGAAAAAGACTTGAGGGTGA
ACTTACTGGTAATAGTATTGCATTGGTAAAAGCTCAGCTTCGTAAGCAAGGTATTACACCTTCAAAGGTCAAACGAAAAC
CAAAACCCCTCTTTGGCATTCAAAGCGCTCAAAAGATTAGCCCTAAAGACATAGCTTTACTCACACGACAAATAGCAACT
ATGTTGATGGCAGGTGTACCACTCATTCAAGCGATTGAAATGATAGGTTCGGGTTCTACTAACAAAAGCGTTGCCAAGTT
AGTGGAGACCATTGGCGATGAAGTTAAAGCTGGTCAACCGCTATCTACAGCACTTAGAAAACACCCACGTTACTTTGACG
ATTTATATTGCGATTTAGTCGCATCAGGCGAGCAATCAGGTGCGCTTGATAAAATATTTGATCGTGTTGCTCTTTATAAA
GAGAAATCTGAAGCCCTAAAATCAAAAATAAAAAAAGCGATGTTTTACCCGATTGCCGTTTTAGTTGTTGCGCTTATTGT
AACTTCAATCCTGCTTATCTTTGTTGTACCTCAATTTCAGGATATCTTTAATGGCTTTGGTGCAGAGCTCCCAGCTTTCA
CGCTATTCGTCATTAGTATATCTGAATTTATGCAAGCATATTGGTGGATGATACTAATCGCTATTGTAGCTTTTGGATAC
GCTTTTAAAGAAGCCAAGCTTAGAAGTTTAAAACTCAGAGATGCAACCGACCGAGCCATACTAAAACTGCCAGTAATTGG
TATGATTTTAAACAAAGCCGCTGTTGCTCGCTATGCACGAACTCTTTCGACTACGTTTGCTGCTGGTGTGCCGCTGGTTG
ATGCGCTTGACTCTGCTGCAGGCGCTTCAGGTAATGCAGTTTACCGTTACGCCATTTTAGACATAAAACTCGAGGTTAGC
TCTGGTAATCAAATGAACTGGGCAATGCGTAACTCAAAAATATTCCCTGATATGGTAATACAAATGGTTGCGATTGGTGA
AGAATCTGGCTCACTAGACGGTATGCTTGCTAAAGTAGCGACTATTTACGAGCAAGAAGTTGATGATGCAGTAGATGGCC
TTTCAAGCCTGCTTGAGCCTCTCATTATGGCCGTACTGGGTGTACTTGTTGGTGGCTTAATTATCGCCATGTACTTGCCT
ATTTTCCAATTAGGTTCTGTAATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.342

98.284

0.623
  pilC Acinetobacter baumannii D1279779

56

98.039

0.549
  pilC Legionella pneumophila strain ERS1305867

56.281

97.549

0.549
  pilC Acinetobacter baylyi ADP1

56.171

97.304

0.547
  pilC Vibrio cholerae strain A1552

45.25

98.039

0.444
  pilC Vibrio campbellii strain DS40M4

43.142

98.284

0.424
  pilG Neisseria meningitidis 44/76-A

43.99

95.833

0.422
  pilG Neisseria gonorrhoeae MS11

43.734

95.833

0.419
  pilC Thermus thermophilus HB27

37.406

98.284

0.368

Multiple sequence alignment