Detailed information NTG0365205

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FFU37_RS13430
• Genome accession: NZ_CP040558
• Coordinates: 3010881..3011774 (+)
• Length: 297 a.a.
• NCBI ID: WP_138490040.1
• Uniprot ID: A0A4P9J5D3
• Organism: Pseudoalteromonas distincta strain 16-SW-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3005881..3016774

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FFU37_RS13410 (FFU37_13410)	ampD	3006734..3007288 (-)	555	WP_138489697.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
FFU37_RS13415 (FFU37_13415)	nadC	3007617..3008468 (+)	852	WP_138489698.1	carboxylating nicotinate-nucleotide diphosphorylase	-
FFU37_RS13420 (FFU37_13420)	-	3008952..3009416 (+)	465	WP_217496773.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
FFU37_RS13425 (FFU37_13425)	pilC	3009492..3010718 (+)	1227	WP_138489699.1	type II secretion system F family protein	Machinery gene
FFU37_RS13430 (FFU37_13430)	pilD	3010881..3011774 (+)	894	WP_138490040.1	A24 family peptidase	Machinery gene
FFU37_RS13435 (FFU37_13435)	coaE	3011776..3012417 (+)	642	WP_138489700.1	dephospho-CoA kinase	-
FFU37_RS13440 (FFU37_13440)	pilB	3012544..3014220 (+)	1677	WP_138489701.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FFU37_RS13445 (FFU37_13445)	yacG	3014331..3014561 (+)	231	WP_002957774.1	DNA gyrase inhibitor YacG	-
FFU37_RS13450 (FFU37_13450)	-	3014635..3015123 (-)	489	WP_138489702.1	Spy/CpxP family protein refolding chaperone	-
FFU37_RS13455 (FFU37_13455)	-	3015313..3016002 (+)	690	WP_138489703.1	response regulator	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 32892.30 Da
• Isoelectric Point: 8.1237

>NTDB_id=365205 FFU37_RS13430 WP_138490040.1 3010881..3011774(+) (pilD) [Pseudoalteromonas distincta strain 16-SW-7]
MQSIIEVMQSQLWFYLTTIGLISLCIGSFLNVVIYRLPLMMQREWQSECRLLLEDELTGNKSKQANINKPFNLVKPNSTC
PKCKTAIKPWQNIPIISWLILKGKCASCSNPISVRYPAVELITALLSLIVAYSFGATEQALLYIFVTWILVALTFIDIDH
MLLPDQLTLPLVWLALIASVMGYTITPTDAIIGAACGYLSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGALLGWQSLLTI
ILLSSVVGAIIGIALLSIQGKDKATPIPFGPYLAIAGWITMLWGNQIQGAYFNLIGY

Nucleotide

• Length: 894 bp

>NTDB_id=365205 FFU37_RS13430 WP_138490040.1 3010881..3011774(+) (pilD) [Pseudoalteromonas distincta strain 16-SW-7]
ATGCAAAGTATTATTGAAGTAATGCAAAGCCAGTTGTGGTTTTATTTAACCACTATTGGCTTAATTAGTTTGTGTATTGG
TAGTTTTTTAAATGTGGTTATTTATCGCTTACCGTTGATGATGCAACGTGAGTGGCAAAGCGAATGCAGACTACTGTTAG
AAGATGAACTTACAGGGAATAAATCTAAACAAGCCAATATCAATAAGCCTTTTAACTTAGTAAAACCCAACTCTACCTGC
CCTAAATGTAAAACAGCCATAAAGCCTTGGCAGAATATTCCTATTATTAGTTGGTTAATACTTAAAGGTAAATGCGCAAG
CTGCAGTAACCCTATTTCGGTCCGATACCCTGCTGTAGAGCTAATTACTGCCCTATTAAGTTTAATTGTTGCCTATAGCT
TTGGTGCGACCGAGCAAGCCCTTTTATATATTTTTGTAACGTGGATATTGGTAGCTCTGACCTTTATTGATATTGACCAC
ATGTTACTGCCGGATCAGCTTACACTTCCGCTTGTTTGGCTTGCACTTATTGCTTCTGTAATGGGTTACACAATTACACC
AACCGATGCAATTATTGGTGCGGCTTGTGGTTATTTAAGTTTGTGGAGCGTGTTTTGGTTATTTAAGTTACTAACCGGTA
AAGAAGGCATGGGTTATGGCGATTTTAAGTTGCTTGCTGTATTTGGGGCGTTACTTGGCTGGCAGTCATTGCTTACTATT
ATTCTGCTTTCGAGCGTAGTGGGTGCCATTATAGGTATTGCGCTGTTGAGCATACAAGGTAAAGACAAAGCGACCCCTAT
CCCTTTTGGCCCTTATTTAGCGATAGCAGGCTGGATCACAATGCTTTGGGGCAACCAAATTCAAGGCGCTTATTTTAATT
TAATAGGTTATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-134)

• Type IV leader peptidase family (Peptidase_A24) (145-253)

3D structure

• AlphaFold DB: A0A4P9J5D3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	51.546	97.98	0.505
pilD	Acinetobacter nosocomialis M2	51.546	97.98	0.505
pilD	Vibrio campbellii strain DS40M4	50.847	99.327	0.505
pilD	Vibrio cholerae strain A1552	51.203	97.98	0.502
pilD	Neisseria gonorrhoeae MS11	45.865	89.562	0.411