Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | FE005_RS05720 | Genome accession | NZ_CP040461 |
| Coordinates | 1214636..1214911 (+) | Length | 91 a.a. |
| NCBI ID | WP_138371443.1 | Uniprot ID | - |
| Organism | Enterococcus sp. M190262 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1209636..1219911
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FE005_RS05695 (FE005_05695) | - | 1209769..1210980 (+) | 1212 | WP_138371441.1 | ABC transporter permease | - |
| FE005_RS05700 (FE005_05700) | - | 1211085..1211864 (+) | 780 | WP_003128432.1 | phosphotransferase family protein | - |
| FE005_RS05705 (FE005_05705) | trmB | 1211918..1212580 (+) | 663 | WP_138371442.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
| FE005_RS05710 (FE005_05710) | comGA | 1212692..1213633 (+) | 942 | WP_005472888.1 | competence type IV pilus ATPase ComGA | - |
| FE005_RS05715 (FE005_05715) | comGB | 1213608..1214639 (+) | 1032 | WP_113850255.1 | competence type IV pilus assembly protein ComGB | - |
| FE005_RS05720 (FE005_05720) | comYC | 1214636..1214911 (+) | 276 | WP_138371443.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FE005_RS05725 (FE005_05725) | comGD | 1214880..1215359 (+) | 480 | WP_138371444.1 | competence type IV pilus minor pilin ComGD | - |
| FE005_RS05730 (FE005_05730) | - | 1215370..1215651 (+) | 282 | WP_103300412.1 | hypothetical protein | - |
| FE005_RS05735 (FE005_05735) | comGF | 1215641..1216054 (+) | 414 | WP_003128440.1 | competence type IV pilus minor pilin ComGF | - |
| FE005_RS16985 (FE005_05740) | comGG | 1216104..1216382 (+) | 279 | WP_050801522.1 | competence type IV pilus minor pilin ComGG | - |
| FE005_RS05745 (FE005_05745) | - | 1216557..1217564 (+) | 1008 | WP_003128442.1 | class I SAM-dependent methyltransferase | - |
| FE005_RS05750 (FE005_05750) | - | 1217589..1218773 (+) | 1185 | WP_003128443.1 | acetate/propionate family kinase | - |
| FE005_RS05755 (FE005_05755) | - | 1218995..1219306 (-) | 312 | WP_081131434.1 | DUF1048 domain-containing protein | - |
| FE005_RS05760 (FE005_05760) | - | 1219316..1219657 (-) | 342 | WP_081131433.1 | DUF1048 domain-containing protein | - |
Sequence
Protein
Download Length: 91 a.a. Molecular weight: 10492.31 Da Isoelectric Point: 6.4633
>NTDB_id=364644 FE005_RS05720 WP_138371443.1 1214636..1214911(+) (comYC) [Enterococcus sp. M190262]
MRKLKHQGFTLVEMLIVLLVISILILLFVPNLSAQRTVIDEKGNAAIVKVVETQIELFQLNENRTPTRQELLAGNYVTEE
QYAIYLVHRNE
MRKLKHQGFTLVEMLIVLLVISILILLFVPNLSAQRTVIDEKGNAAIVKVVETQIELFQLNENRTPTRQELLAGNYVTEE
QYAIYLVHRNE
Nucleotide
Download Length: 276 bp
>NTDB_id=364644 FE005_RS05720 WP_138371443.1 1214636..1214911(+) (comYC) [Enterococcus sp. M190262]
ATGAGAAAATTGAAGCATCAAGGGTTCACATTGGTGGAGATGCTGATTGTACTGTTAGTGATCAGTATTTTGATTTTATT
GTTTGTACCAAACTTATCCGCACAACGTACAGTGATAGATGAGAAAGGAAATGCGGCAATCGTCAAAGTCGTAGAAACCC
AGATTGAGTTGTTCCAGCTTAATGAGAATCGAACACCTACTCGACAAGAATTACTAGCTGGAAATTACGTAACGGAGGAG
CAGTATGCGATTTATCTTGTCCATCGGAACGAATAG
ATGAGAAAATTGAAGCATCAAGGGTTCACATTGGTGGAGATGCTGATTGTACTGTTAGTGATCAGTATTTTGATTTTATT
GTTTGTACCAAACTTATCCGCACAACGTACAGTGATAGATGAGAAAGGAAATGCGGCAATCGTCAAAGTCGTAGAAACCC
AGATTGAGTTGTTCCAGCTTAATGAGAATCGAACACCTACTCGACAAGAATTACTAGCTGGAAATTACGTAACGGAGGAG
CAGTATGCGATTTATCTTGTCCATCGGAACGAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus suis isolate S10 |
51.613 |
100 |
0.527 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
51.765 |
93.407 |
0.484 |
| comGC/cglC | Streptococcus pneumoniae D39 |
51.765 |
93.407 |
0.484 |
| comGC/cglC | Streptococcus pneumoniae R6 |
51.765 |
93.407 |
0.484 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
51.765 |
93.407 |
0.484 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
51.765 |
93.407 |
0.484 |
| comGC/cglC | Streptococcus mitis SK321 |
51.765 |
93.407 |
0.484 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
50 |
96.703 |
0.484 |
| comYC | Streptococcus mutans UA140 |
48.864 |
96.703 |
0.473 |
| comYC | Streptococcus mutans UA159 |
48.864 |
96.703 |
0.473 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
47.191 |
97.802 |
0.462 |
| comGC | Staphylococcus aureus N315 |
44.872 |
85.714 |
0.385 |
| comGC | Staphylococcus aureus MW2 |
44.872 |
85.714 |
0.385 |