Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FEO94_RS16690 Genome accession   NZ_CP040433
Coordinates   3634597..3635856 (+) Length   419 a.a.
NCBI ID   WP_154351297.1    Uniprot ID   A0AAX1IB28
Organism   Stenotrophomonas maltophilia strain SKK55     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3629597..3640856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEO94_RS16675 (FEO94_16825) pilB 3630891..3632621 (-) 1731 WP_154351295.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FEO94_RS16680 (FEO94_16830) - 3632781..3633614 (-) 834 WP_185807474.1 sterol desaturase family protein -
  FEO94_RS16685 (FEO94_16835) pilA/pilAI 3633814..3634242 (-) 429 WP_072167642.1 pilin Machinery gene
  FEO94_RS16690 (FEO94_16840) pilC 3634597..3635856 (+) 1260 WP_154351297.1 type II secretion system F family protein Machinery gene
  FEO94_RS16695 (FEO94_16845) - 3635860..3636723 (+) 864 WP_065185263.1 A24 family peptidase -
  FEO94_RS16700 (FEO94_16850) coaE 3636735..3637346 (+) 612 WP_154351298.1 dephospho-CoA kinase -
  FEO94_RS16705 (FEO94_16855) - 3637520..3637906 (-) 387 WP_053499205.1 hypothetical protein -
  FEO94_RS16710 (FEO94_16860) - 3638441..3639811 (-) 1371 WP_069139309.1 HAMP domain-containing sensor histidine kinase -
  FEO94_RS16715 (FEO94_16865) - 3639774..3640451 (-) 678 WP_005410804.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45903.27 Da        Isoelectric Point: 10.1940

>NTDB_id=364405 FEO94_RS16690 WP_154351297.1 3634597..3635856(+) (pilC) [Stenotrophomonas maltophilia strain SKK55]
MSVSGSAMKKEPVARSTTELQPFVWEGTDKRGVKMKGEQMAKNANLLRAELRRQGITPKAVKAKPKPIFGSTGSRITPKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNLRMKRMIGTIRADIEGGSSLYEAISRHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIETLKGKIKKALFYPIMVMAVAILVSGILLVWVVPQFEDVFKGFGAELPAFTQLIVGVSRFLVSWWWL
ILFTFVGAIVGFIAAYKRSPKLQHTMDRLILRVPVIGLIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
SVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPFIMVIIGGIV
GSIVIGMYLPIFKLAGAVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=364405 FEO94_RS16690 WP_154351297.1 3634597..3635856(+) (pilC) [Stenotrophomonas maltophilia strain SKK55]
ATGTCTGTCAGTGGCAGTGCAATGAAGAAAGAACCCGTGGCGCGCAGCACCACGGAACTGCAGCCGTTTGTATGGGAGGG
GACCGACAAGCGGGGTGTGAAGATGAAAGGCGAGCAGATGGCAAAGAACGCCAATCTGTTGCGCGCAGAATTGAGACGCC
AGGGCATCACGCCCAAAGCGGTGAAGGCGAAGCCAAAGCCCATTTTCGGCAGCACAGGCAGCAGGATTACGCCGAAGGAC
ATTGCCTTCTTCAGTCGCCAGATGGCAACCATGATGAAGTCAGGTGTGCCTATCGTCTCTTCACTCGAGATCATTGGCGA
AGGGCACAAGAACCTTCGGATGAAGAGGATGATCGGAACGATCCGCGCCGATATCGAGGGCGGCTCATCCCTATATGAGG
CGATCAGCAGACATCCAGTGCAGTTCGACGAACTGTATCGCAACCTGGTCCGCGCGGGCGAAGGCGCTGGCGTATTGGAG
ACCGTGCTTGACACTGTGGCCAACTACAAGGAGAACATTGAAACACTCAAGGGCAAGATCAAGAAGGCGCTGTTTTATCC
GATCATGGTCATGGCAGTCGCCATCCTGGTCAGTGGCATCCTACTTGTCTGGGTGGTCCCTCAATTCGAAGATGTCTTCA
AAGGCTTCGGAGCCGAATTGCCCGCTTTCACCCAGCTGATTGTTGGCGTTTCTCGCTTCTTGGTGTCTTGGTGGTGGCTG
ATCCTGTTCACTTTTGTGGGGGCGATAGTTGGCTTCATCGCAGCCTACAAGCGCTCTCCGAAGCTGCAACACACGATGGA
CCGATTGATCCTGAGGGTGCCAGTGATCGGCCTGATCATGCACAACAGCTCAATTGCCCGCTTTGCACGTACCACTGCAG
TGACCTTCAAGGCCGGCGTGCCCTTGGTGGAGGCGTTGGGCATTGTCGCCGGCGCGACCGGCAACAAGGTCTACGAAGAG
TCCGTACTGCGGATGCGTGACGACGTGTCGGTCGGCTATCCCGTGAACATGGCCATGAAGCAGCTGAACCTATTTCCTCA
TATGGTCATCCAGATGACCGGCATCGGCGAGGAGGCCGGTGCTCTGGACGCCATGCTGTTCAAGGTCGCCGAGTACTATG
AGCAGGAAGTCAACAACGCCGTGGACGCATTGAGCAGTCTGCTTGAACCTTTCATCATGGTCATCATTGGCGGAATTGTC
GGCAGCATCGTGATCGGCATGTACCTGCCGATCTTCAAGCTCGCAGGAGCGGTAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

50.99

96.42

0.492
  pilC Pseudomonas stutzeri DSM 10701

51.768

94.511

0.489
  pilC Acinetobacter baylyi ADP1

49.261

96.897

0.477
  pilC Acinetobacter baumannii D1279779

48.866

94.749

0.463
  pilG Neisseria gonorrhoeae MS11

43.467

94.988

0.413
  pilG Neisseria meningitidis 44/76-A

42.965

94.988

0.408
  pilC Vibrio cholerae strain A1552

39.655

96.897

0.384
  pilC Vibrio campbellii strain DS40M4

38.653

95.704

0.37
  pilC Thermus thermophilus HB27

37.346

97.136

0.363

Multiple sequence alignment