Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   FED53_RS01595 Genome accession   NZ_CP040367
Coordinates   192781..193125 (+) Length   114 a.a.
NCBI ID   WP_025908776.1    Uniprot ID   A0A8I1MIH1
Organism   Priestia flexa isolate 1-2-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 187781..198125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED53_RS01565 (FED53_01565) - 188100..189101 (+) 1002 WP_025908770.1 rod shape-determining protein -
  FED53_RS01570 (FED53_01570) - 189216..190031 (+) 816 WP_061785672.1 flagellar hook-basal body protein -
  FED53_RS01575 (FED53_01575) - 190063..190887 (+) 825 WP_138116387.1 flagellar hook-basal body protein -
  FED53_RS01580 (FED53_01580) - 191013..191267 (+) 255 WP_138116391.1 hypothetical protein -
  FED53_RS01585 (FED53_01585) - 191301..191723 (-) 423 WP_175406211.1 helix-turn-helix transcriptional regulator -
  FED53_RS20665 - 192010..192174 (+) 165 WP_156413452.1 hypothetical protein -
  FED53_RS01590 (FED53_01590) - 192192..192659 (-) 468 WP_025908775.1 YwpF family protein -
  FED53_RS01595 (FED53_01595) ssbB 192781..193125 (+) 345 WP_025908776.1 single-stranded DNA-binding protein Machinery gene
  FED53_RS01600 (FED53_01600) - 193305..194360 (-) 1056 WP_025908777.1 LysM peptidoglycan-binding domain-containing protein -
  FED53_RS21585 - 194526..196112 (-) 1587 WP_420892543.1 DEAD/DEAH box helicase -
  FED53_RS21590 - 196098..197141 (-) 1044 Protein_178 SNF2 helicase-associated domain-containing protein -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 13005.79 Da        Isoelectric Point: 7.9924

>NTDB_id=363672 FED53_RS01595 WP_025908776.1 192781..193125(+) (ssbB) [Priestia flexa isolate 1-2-1]
MINEVVLVGRLTRVPELKYTSEGIPFSHITVAVNRNFRNQEGEVEADFVSITLWRKNAENMTKYCDKGSIIGVVGRVQTR
TFENNLQQRVYVTDIIAEYVRFLSGKPSSPENQP

Nucleotide


Download         Length: 345 bp        

>NTDB_id=363672 FED53_RS01595 WP_025908776.1 192781..193125(+) (ssbB) [Priestia flexa isolate 1-2-1]
TTGATTAATGAAGTAGTGCTAGTAGGGCGTTTGACACGAGTTCCTGAACTGAAATATACATCCGAAGGAATTCCTTTTTC
CCATATTACAGTAGCTGTGAACAGAAACTTTCGTAACCAGGAAGGAGAAGTGGAAGCTGATTTTGTATCAATTACGTTAT
GGAGAAAAAATGCTGAAAACATGACGAAATACTGCGATAAGGGATCGATTATAGGAGTCGTAGGACGTGTGCAAACGCGT
ACGTTTGAAAACAATTTGCAGCAGCGTGTTTATGTGACAGATATTATCGCAGAATACGTTCGGTTTTTAAGCGGTAAGCC
TTCCTCACCTGAAAATCAACCATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.009

93.86

0.535
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.717

92.982

0.509
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

99.123

0.474
  ssbB/cilA Streptococcus mitis NCTC 12261

42.991

93.86

0.404
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.991

93.86

0.404
  ssbB/cilA Streptococcus mitis SK321

42.056

93.86

0.395
  ssbB/cilA Streptococcus pneumoniae Rx1

42.056

93.86

0.395
  ssbB/cilA Streptococcus pneumoniae D39

42.056

93.86

0.395
  ssbB/cilA Streptococcus pneumoniae R6

42.056

93.86

0.395
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.056

93.86

0.395
  ssbB Lactococcus lactis subsp. cremoris KW2

43.75

84.211

0.368

Multiple sequence alignment