Detailed information
Bioinformatically predicted
Overview
| Name | ssbB/cilA | Type | Machinery gene |
| Locus tag | SMI_RS02450 | Genome accession | NC_013853 |
| Coordinates | 442436..442813 (+) | Length | 125 a.a. |
| NCBI ID | WP_000580360.1 | Uniprot ID | - |
| Organism | Streptococcus mitis B6 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 437436..447813
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SMI_RS02420 (smi_0474) | - | 437445..437909 (+) | 465 | WP_231840213.1 | hypothetical protein | - |
| SMI_RS02425 (smi_0475) | - | 437970..438233 (+) | 264 | WP_231840214.1 | hypothetical protein | - |
| SMI_RS02430 (smi_0476) | - | 438233..438865 (+) | 633 | WP_000178822.1 | hypothetical protein | - |
| SMI_RS02435 (smi_0477) | - | 438879..439214 (+) | 336 | WP_000191484.1 | phage holin | - |
| SMI_RS02440 (smi_0478) | - | 439214..440170 (+) | 957 | WP_000350519.1 | N-acetylmuramoyl-L-alanine amidase family protein | - |
| SMI_RS02445 (smi_0479) | - | 440329..442014 (-) | 1686 | WP_000276229.1 | IS1182-like element ISSmi2 family transposase | - |
| SMI_RS02450 (smi_0480) | ssbB/cilA | 442436..442813 (+) | 378 | WP_000580360.1 | single-stranded DNA-binding protein | Machinery gene |
| SMI_RS02455 (smi_0481) | groES | 442969..443253 (+) | 285 | WP_000917323.1 | co-chaperone GroES | - |
| SMI_RS02460 (smi_0482) | groL | 443269..444891 (+) | 1623 | WP_000031562.1 | chaperonin GroEL | - |
| SMI_RS02465 (smi_0483) | - | 445029..445796 (+) | 768 | WP_000567572.1 | epoxyqueuosine reductase QueH | - |
| SMI_RS02470 (smi_0484) | - | 446196..446969 (+) | 774 | WP_000566050.1 | class I SAM-dependent methyltransferase | - |
Sequence
Protein
Download Length: 125 a.a. Molecular weight: 14218.00 Da Isoelectric Point: 5.2813
>NTDB_id=36306 SMI_RS02450 WP_000580360.1 442436..442813(+) (ssbB/cilA) [Streptococcus mitis B6]
MIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTRRFEKNG
QMNYVNEVLVTGFQLLESRAQRAMRENNVGQDLADLVLEEEELPF
MIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTRRFEKNG
QMNYVNEVLVTGFQLLESRAQRAMRENNVGQDLADLVLEEEELPF
Nucleotide
Download Length: 378 bp
>NTDB_id=36306 SMI_RS02450 WP_000580360.1 442436..442813(+) (ssbB/cilA) [Streptococcus mitis B6]
ATGATTGGGCGTTTGACGTCTACACCAGAATTGCATAAAACCAACAATGACAAGTCAGTAGCGCGCGCGACTATTGCAGT
CAACCGTCGTTACAAAGACCAAAACGGGGAACGCGAAGCAGATTTTGTCAATATGGTCCTATGGGGCAGACTAGCAGAAA
CATTGGCCAGCTACGCAACTAAAGGTAGTCTCATTTCCGTTGATGGGGAATTGCGTACCCGTCGTTTTGAGAAAAATGGT
CAAATGAACTACGTGAACGAAGTACTTGTTACAGGATTCCAACTCTTGGAAAGTCGTGCCCAACGTGCCATGCGTGAAAA
TAATGTAGGGCAGGATTTGGCAGATTTGGTTTTGGAAGAGGAAGAATTGCCATTTTAA
ATGATTGGGCGTTTGACGTCTACACCAGAATTGCATAAAACCAACAATGACAAGTCAGTAGCGCGCGCGACTATTGCAGT
CAACCGTCGTTACAAAGACCAAAACGGGGAACGCGAAGCAGATTTTGTCAATATGGTCCTATGGGGCAGACTAGCAGAAA
CATTGGCCAGCTACGCAACTAAAGGTAGTCTCATTTCCGTTGATGGGGAATTGCGTACCCGTCGTTTTGAGAAAAATGGT
CAAATGAACTACGTGAACGAAGTACTTGTTACAGGATTCCAACTCTTGGAAAGTCGTGCCCAACGTGCCATGCGTGAAAA
TAATGTAGGGCAGGATTTGGCAGATTTGGTTTTGGAAGAGGAAGAATTGCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
98.4 |
100 |
0.984 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
98.4 |
100 |
0.984 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
98.4 |
100 |
0.984 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
97.6 |
100 |
0.976 |
| ssbB/cilA | Streptococcus mitis SK321 |
97.6 |
100 |
0.976 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
96.8 |
100 |
0.968 |
| ssbA | Streptococcus mutans UA159 |
72.8 |
100 |
0.728 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
68 |
100 |
0.68 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
59.091 |
88 |
0.52 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50 |
80 |
0.4 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
45.794 |
85.6 |
0.392 |