Detailed information NTG0036288

Bioinformatically predicted

Overview

• Name: comGF/cglF
• Type: Machinery gene
• Locus tag: SMI_RS01090
• Genome accession: NC_013853
• Coordinates: 208439..208900 (+)
• Length: 153 a.a.
• NCBI ID: WP_000250522.1
• Uniprot ID: -
• Organism: Streptococcus mitis B6
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 203439..213900

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SMI_RS01055 (smi_0203)	-	203998..205056 (+)	1059	WP_000649461.1	zinc-dependent alcohol dehydrogenase family protein	-
SMI_RS01060 (smi_0204)	-	205142..205507 (+)	366	WP_000286392.1	DUF1033 family protein	-
SMI_RS01065 (smi_0205)	comGA/cglA/cilD	205584..206525 (+)	942	WP_000249543.1	competence type IV pilus ATPase ComGA	Machinery gene
SMI_RS01070 (smi_0206)	comGB/cglB	206473..207489 (+)	1017	WP_164925538.1	competence type IV pilus assembly protein ComGB	Machinery gene
SMI_RS01075 (smi_0207)	comGC/cglC	207491..207814 (+)	324	WP_000738641.1	comG operon protein ComGC	Machinery gene
SMI_RS01080 (smi_0208)	comGD/cglD	207777..208211 (+)	435	WP_164925504.1	competence type IV pilus minor pilin ComGD	Machinery gene
SMI_RS01085 (smi_0209)	comGE/cglE	208174..208476 (+)	303	WP_153197443.1	competence type IV pilus minor pilin ComGE	Machinery gene
SMI_RS01090 (smi_0210)	comGF/cglF	208439..208900 (+)	462	WP_000250522.1	competence type IV pilus minor pilin ComGF	Machinery gene
SMI_RS01095 (smi_0211)	comGG/cglG	208878..209291 (+)	414	WP_000265641.1	competence type IV pilus minor pilin ComGG	Machinery gene
SMI_RS01100 (smi_0212)	-	209324..209909 (+)	586	Protein_201	class I SAM-dependent methyltransferase	-
SMI_RS01105 (smi_0213)	comYH	209970..210923 (+)	954	WP_000345096.1	class I SAM-dependent methyltransferase	Machinery gene
SMI_RS01110 (smi_0214)	-	211034..212167 (+)	1134	WP_001113734.1	acetate kinase	-
SMI_RS01115 (smi_0215)	rnpA	212313..212684 (+)	372	WP_000739250.1	ribonuclease P protein component	-
SMI_RS01120 (smi_0216)	-	212659..213483 (+)	825	WP_219335883.1	membrane protein insertase YidC	-

Sequence

Protein

• Length: 153 a.a.
• Molecular weight: 17839.47 Da
• Isoelectric Point: 9.3131

>NTDB_id=36288 SMI_RS01090 WP_000250522.1 208439..208900(+) (comGF/cglF) [Streptococcus mitis B6]
MVQNSCWQSKSHKVKAFTLLESLIALIVISGSLLLFQAMSQLLISEVRYQQQSEQKEWLLFVDQLEAELDRSQFEKVEGN
RLYMKQDGKEIAIGKSKSDDFRKTDASGRGYQPMVYGLKSAQITEENQLVRFRFQFQKGLEREFIYRVEKAKS

Nucleotide

• Length: 462 bp

>NTDB_id=36288 SMI_RS01090 WP_000250522.1 208439..208900(+) (comGF/cglF) [Streptococcus mitis B6]
ATGGTTCAGAACAGTTGTTGGCAATCAAAGAGCCATAAGGTCAAGGCTTTTACCTTGTTAGAATCCCTGATTGCCCTCAT
TGTCATCAGTGGAAGCTTACTCCTCTTTCAAGCCATGAGTCAGCTCCTCATTTCAGAAGTTCGATACCAGCAGCAAAGTG
AGCAAAAAGAGTGGCTCTTGTTTGTGGACCAGTTGGAGGCAGAATTAGATCGTTCGCAATTCGAAAAAGTGGAGGGAAAT
CGCCTATACATGAAGCAAGATGGCAAGGAAATTGCGATAGGTAAGTCAAAATCGGATGATTTTCGAAAAACTGATGCCAG
TGGACGAGGTTATCAGCCTATGGTTTATGGCCTCAAATCTGCGCAGATTACAGAGGAGAATCAACTGGTTCGCTTTCGTT
TTCAATTCCAAAAAGGCTTAGAAAGGGAGTTCATCTATCGTGTGGAAAAAGCAAAAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (45-141)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF/cglF	Streptococcus mitis NCTC 12261	96.732	100	0.967
comGF/cglF	Streptococcus mitis SK321	95.425	100	0.954
comGF/cglF	Streptococcus pneumoniae Rx1	92.81	100	0.928
comGF/cglF	Streptococcus pneumoniae D39	92.81	100	0.928
comGF/cglF	Streptococcus pneumoniae R6	92.81	100	0.928
comGF/cglF	Streptococcus pneumoniae TIGR4	92.81	100	0.928
comGF	Lactococcus lactis subsp. cremoris KW2	40.714	91.503	0.373