Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SMI_RS01105 | Genome accession | NC_013853 |
| Coordinates | 209970..210923 (+) | Length | 317 a.a. |
| NCBI ID | WP_000345096.1 | Uniprot ID | D3H6K6 |
| Organism | Streptococcus mitis B6 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 204970..215923
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SMI_RS01060 (smi_0204) | - | 205142..205507 (+) | 366 | WP_000286392.1 | DUF1033 family protein | - |
| SMI_RS01065 (smi_0205) | comGA/cglA/cilD | 205584..206525 (+) | 942 | WP_000249543.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SMI_RS01070 (smi_0206) | comGB/cglB | 206473..207489 (+) | 1017 | WP_164925538.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SMI_RS01075 (smi_0207) | comGC/cglC | 207491..207814 (+) | 324 | WP_000738641.1 | comG operon protein ComGC | Machinery gene |
| SMI_RS01080 (smi_0208) | comGD/cglD | 207777..208211 (+) | 435 | WP_164925504.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| SMI_RS01085 (smi_0209) | comGE/cglE | 208174..208476 (+) | 303 | WP_153197443.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| SMI_RS01090 (smi_0210) | comGF/cglF | 208439..208900 (+) | 462 | WP_000250522.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SMI_RS01095 (smi_0211) | comGG/cglG | 208878..209291 (+) | 414 | WP_000265641.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| SMI_RS01100 (smi_0212) | - | 209324..209909 (+) | 586 | Protein_201 | class I SAM-dependent methyltransferase | - |
| SMI_RS01105 (smi_0213) | comYH | 209970..210923 (+) | 954 | WP_000345096.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SMI_RS01110 (smi_0214) | - | 211034..212167 (+) | 1134 | WP_001113734.1 | acetate kinase | - |
| SMI_RS01115 (smi_0215) | rnpA | 212313..212684 (+) | 372 | WP_000739250.1 | ribonuclease P protein component | - |
| SMI_RS01120 (smi_0216) | - | 212659..213483 (+) | 825 | WP_219335883.1 | membrane protein insertase YidC | - |
| SMI_RS01125 (smi_0217) | jag | 213501..214490 (+) | 990 | WP_000260002.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| SMI_RS01130 (smi_0218) | - | 214541..215176 (+) | 636 | WP_000932649.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35666.91 Da Isoelectric Point: 4.2821
>NTDB_id=36290 SMI_RS01105 WP_000345096.1 209970..210923(+) (comYH) [Streptococcus mitis B6]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEHVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVALRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
GDLLKGWLKEDATLVAMISLPENLFASAKQSKTIFILQKKSEIAVEPFIYPLSSLQDASILMKFKENFQKWTQGTEI
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEHVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVALRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
GDLLKGWLKEDATLVAMISLPENLFASAKQSKTIFILQKKSEIAVEPFIYPLSSLQDASILMKFKENFQKWTQGTEI
Nucleotide
Download Length: 954 bp
>NTDB_id=36290 SMI_RS01105 WP_000345096.1 209970..210923(+) (comYH) [Streptococcus mitis B6]
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCCTGGTGGAGCAAAACAGCATCTATTTGGATGGTGAGACTGAGTTAGAGCATGTCAAGGAAAACAATC
AGGCTCTTAAACGCTTAGCGCTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAGACA
GAACCCTTGCAGGCTAATCACCAGTTTACGCCAGATGCTATTGCCTTACTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATCACTATCCTCGAAATGGGGTCTGGAATGGGGATTCTGGGCGCAACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTATTTGGGAATGGAAGTAGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGCGACTTGCCTGTCGG
TTATTATCCTGATGATGCTGTTGCGTTGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGCCTTAAGTATCTCAAGTCAGATGGATACGCTATTTTTCTCGCTCCGAGTGATTTGTTGACCAGCCCTCAA
GGTGATTTGTTGAAAGGGTGGTTGAAAGAGGATGCGACTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCCAG
TGCTAAACAATCCAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTATTTATCCACTTTCTA
GCTTGCAAGATGCAAGTATTCTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCCTGGTGGAGCAAAACAGCATCTATTTGGATGGTGAGACTGAGTTAGAGCATGTCAAGGAAAACAATC
AGGCTCTTAAACGCTTAGCGCTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAGACA
GAACCCTTGCAGGCTAATCACCAGTTTACGCCAGATGCTATTGCCTTACTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATCACTATCCTCGAAATGGGGTCTGGAATGGGGATTCTGGGCGCAACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTATTTGGGAATGGAAGTAGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGCGACTTGCCTGTCGG
TTATTATCCTGATGATGCTGTTGCGTTGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGCCTTAAGTATCTCAAGTCAGATGGATACGCTATTTTTCTCGCTCCGAGTGATTTGTTGACCAGCCCTCAA
GGTGATTTGTTGAAAGGGTGGTTGAAAGAGGATGCGACTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCCAG
TGCTAAACAATCCAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTATTTATCCACTTTCTA
GCTTGCAAGATGCAAGTATTCTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
54.633 |
98.738 |
0.539 |
| comYH | Streptococcus mutans UA159 |
54.313 |
98.738 |
0.536 |