Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   FDZ90_RS12260 Genome accession   NZ_CP040172
Coordinates   2536200..2536811 (+) Length   203 a.a.
NCBI ID   WP_100653609.1    Uniprot ID   -
Organism   Vibrio cholerae strain VC1374     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2531200..2541811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDZ90_RS12240 (FDZ90_12605) - 2531533..2532450 (-) 918 WP_000271063.1 ABC transporter ATP-binding protein -
  FDZ90_RS12245 (FDZ90_12610) - 2532834..2534480 (-) 1647 WP_000484911.1 SulP family inorganic anion transporter -
  FDZ90_RS12250 (FDZ90_12615) can 2534628..2535296 (+) 669 WP_001114117.1 carbonate dehydratase -
  FDZ90_RS12255 (FDZ90_12620) hpt 2535371..2535904 (-) 534 WP_000683351.1 hypoxanthine phosphoribosyltransferase -
  FDZ90_RS12260 (FDZ90_12625) hapR 2536200..2536811 (+) 612 WP_100653609.1 quorum-sensing master transcriptional regulator HapR Regulator
  FDZ90_RS12265 (FDZ90_12635) rsmI 2537025..2537891 (-) 867 WP_000131542.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  FDZ90_RS12270 (FDZ90_12640) - 2537961..2539766 (+) 1806 WP_001015481.1 penicillin-binding protein activator -
  FDZ90_RS12275 (FDZ90_12645) - 2539753..2540121 (+) 369 WP_001893625.1 YraN family protein -
  FDZ90_RS12280 (FDZ90_12650) - 2540125..2540715 (+) 591 WP_000887295.1 phosphoheptose isomerase -
  FDZ90_RS12285 (FDZ90_12655) - 2540718..2541287 (+) 570 WP_000836326.1 BON domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23664.33 Da        Isoelectric Point: 6.6356

>NTDB_id=362455 FDZ90_RS12260 WP_100653609.1 2536200..2536811(+) (hapR) [Vibrio cholerae strain VC1374]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLDVKTNLQTLCKEMVKLAMTDCHWLKAWFEWSASTRDEVWPLFVSTNRTNQLLIRNMFMKAMERGELCEKHDV
DNMASLFHGIFYSIFLQVNRLGEQEAVYKLADSYLNMLCIYKN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=362455 FDZ90_RS12260 WP_100653609.1 2536200..2536811(+) (hapR) [Vibrio cholerae strain VC1374]
ATGGACGCATCAATCGAAAAACGCCCTCGAACTCGGCTATCGCCTCAAAAACGCAAACTACAACTGATGGAAATCGCGTT
GGAAGTGTTTGCTAAACGCGGCATTGGTCGTGGTGGTCACGCAGATATTGCCGAGATTGCGCAAGTCTCCGTTGCAACAG
TGTTCAACTACTTCCCAACTCGTGAAGACTTGGTTGACGATGTGCTGAATTTTGTGGTTCGTCAGTACTCCAACTTCTTG
ACCGATCACATCGATCTTGATTTGGATGTGAAAACCAACCTACAAACTCTGTGCAAAGAGATGGTGAAATTGGCGATGAC
CGATTGTCACTGGCTCAAAGCCTGGTTTGAGTGGAGTGCTTCAACCCGTGACGAAGTTTGGCCACTGTTTGTTTCCACCA
ACCGAACTAACCAACTGCTGATCAGAAACATGTTTATGAAAGCGATGGAGCGTGGCGAATTGTGTGAGAAACACGATGTC
GATAACATGGCCAGCCTGTTCCACGGCATCTTCTACTCCATCTTCTTACAAGTGAACCGTTTAGGTGAACAAGAAGCAGT
GTATAAGTTGGCCGATAGCTACCTCAATATGCTGTGTATCTATAAGAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

99.507

100

0.995
  hapR Vibrio cholerae strain A1552

99.507

100

0.995
  opaR Vibrio parahaemolyticus RIMD 2210633

71.717

97.537

0.7

Multiple sequence alignment