Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FAY22_RS13720 Genome accession   NZ_CP040128
Coordinates   2977829..2979061 (+) Length   410 a.a.
NCBI ID   WP_146330729.1    Uniprot ID   A0A5B8N9J5
Organism   Noviherbaspirillum sp. UKPF54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2972829..2984061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY22_RS13700 (FAY22_13700) ispB 2973376..2974305 (+) 930 WP_210411967.1 octaprenyl diphosphate synthase -
  FAY22_RS13710 (FAY22_13710) - 2974509..2975810 (+) 1302 WP_146330727.1 HlyC/CorC family transporter -
  FAY22_RS13715 (FAY22_13715) pilB 2976127..2977815 (+) 1689 WP_305778371.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FAY22_RS13720 (FAY22_13720) pilC 2977829..2979061 (+) 1233 WP_146330729.1 type II secretion system F family protein Machinery gene
  FAY22_RS13725 (FAY22_13725) pilD 2979061..2979927 (+) 867 WP_146330730.1 A24 family peptidase Machinery gene
  FAY22_RS13730 (FAY22_13730) coaE 2979929..2980576 (+) 648 WP_146330731.1 dephospho-CoA kinase -
  FAY22_RS13735 (FAY22_13735) zapD 2980697..2981452 (+) 756 WP_146330732.1 cell division protein ZapD -
  FAY22_RS13740 (FAY22_13740) yacG 2981464..2981646 (+) 183 WP_146330733.1 DNA gyrase inhibitor YacG -
  FAY22_RS13745 (FAY22_13745) - 2981650..2983203 (-) 1554 WP_146330734.1 sigma-54-dependent transcriptional regulator -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44612.45 Da        Isoelectric Point: 9.9696

>NTDB_id=362401 FAY22_RS13720 WP_146330729.1 2977829..2979061(+) (pilC) [Noviherbaspirillum sp. UKPF54]
MATAAGKSASTSPIKEVIFAWEGKDRTGKTIKGELRAGSETIVNVTLRRQGILVTKVKKKSFSTGRKITDKDITLFTRQL
ATMMKAGVPLLQSFDIVAKGHSNPAVSKLIQDIRADVETGSSLNQAFRKFPLYFDHLFCNLVAAGEQAGILEDLLTRLAV
YKEKTQAIKGKIKSAMFYPTAVMVVAFVVTSVIMIWVVPAFKDVFKSFGADLPAPTLFVMAISDYFVKYWYLIFGSLGAG
LYLFFQSWRRSVKMQRVMDRLLLQAPVFGDVIRKATVARWTRTLATMFAAGVPLVESLDSVGGASGNSIYADATKKIQTE
VSTGTSLTVAMQNAAVFPSMVTQMVAIGEESGALDQMLSKVADFYEAEVDEAVESLSSLMEPLIMAILGVLIGGLVIAMY
LPIFKLGAVV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=362401 FAY22_RS13720 WP_146330729.1 2977829..2979061(+) (pilC) [Noviherbaspirillum sp. UKPF54]
ATGGCAACTGCCGCTGGCAAATCCGCAAGCACGAGTCCGATAAAGGAAGTGATCTTTGCCTGGGAAGGCAAGGACAGGAC
TGGCAAAACGATCAAGGGCGAACTGCGCGCAGGCAGCGAAACCATTGTCAACGTGACCCTGCGCCGGCAAGGCATTCTTG
TCACGAAAGTCAAAAAGAAAAGCTTTAGCACCGGCAGGAAAATCACGGACAAGGACATCACCCTGTTCACGCGCCAGCTG
GCGACCATGATGAAAGCCGGTGTTCCCCTGCTGCAGTCATTCGACATCGTGGCAAAAGGCCATTCCAATCCCGCTGTCTC
CAAGCTGATTCAGGACATCCGGGCAGATGTCGAAACCGGCAGCAGCCTGAATCAGGCGTTTCGCAAGTTCCCGCTGTACT
TCGACCATCTGTTCTGCAACCTGGTGGCGGCCGGCGAACAGGCCGGTATCCTGGAAGACTTGCTGACACGCCTGGCGGTA
TACAAGGAAAAAACGCAAGCCATCAAGGGCAAGATCAAGTCCGCCATGTTCTACCCGACGGCGGTCATGGTGGTCGCCTT
CGTCGTGACGTCGGTGATCATGATCTGGGTGGTGCCGGCGTTCAAGGATGTGTTCAAGAGTTTTGGCGCCGATCTGCCGG
CACCGACACTTTTCGTGATGGCGATTTCGGATTACTTCGTCAAATACTGGTACTTGATTTTCGGCTCGCTCGGCGCAGGG
CTTTACTTGTTTTTCCAATCCTGGCGACGCTCCGTAAAAATGCAGCGCGTGATGGACCGTCTTTTGCTGCAGGCGCCGGT
ATTCGGCGACGTGATCCGCAAGGCTACCGTCGCGCGCTGGACGCGCACCTTGGCGACCATGTTCGCCGCCGGCGTGCCGC
TGGTGGAGTCGCTCGATTCGGTCGGGGGCGCCTCCGGCAACTCGATCTACGCGGACGCAACGAAAAAAATCCAGACCGAA
GTCAGCACCGGCACCAGCCTGACCGTCGCCATGCAAAATGCCGCCGTCTTCCCCAGCATGGTCACGCAAATGGTGGCCAT
CGGCGAAGAGTCCGGCGCGCTCGACCAAATGCTGAGCAAGGTTGCGGATTTCTACGAGGCGGAAGTCGATGAGGCCGTCG
AGTCGCTCTCCAGCCTGATGGAGCCGCTCATCATGGCCATCCTGGGCGTGCTGATCGGCGGCCTAGTGATCGCGATGTAC
CTGCCGATTTTCAAGCTTGGAGCCGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8N9J5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.5

97.561

0.551
  pilC Acinetobacter baumannii D1279779

55.164

96.829

0.534
  pilC Legionella pneumophila strain ERS1305867

54.545

96.585

0.527
  pilC Acinetobacter baylyi ADP1

53.518

97.073

0.52
  pilG Neisseria gonorrhoeae MS11

52.393

96.829

0.507
  pilG Neisseria meningitidis 44/76-A

52.393

96.829

0.507
  pilC Vibrio cholerae strain A1552

39.609

99.756

0.395
  pilC Vibrio campbellii strain DS40M4

39.394

96.585

0.38
  pilC Thermus thermophilus HB27

37.59

100

0.38

Multiple sequence alignment