Detailed information NTG0362402

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: E3S88_RS06480
• Genome accession: NZ_CP047792
• Coordinates: 1326414..1327100 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692861.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain UP_794
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1321414..1332100

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3S88_RS06435 (E3S88_06435)	rpmA	1322129..1322413 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
E3S88_RS06440 (E3S88_06440)	-	1322425..1322745 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
E3S88_RS06445 (E3S88_06445)	rplU	1322751..1323059 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
E3S88_RS06450 (E3S88_06450)	mreD	1323352..1323882 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
E3S88_RS06455 (E3S88_06455)	mreC	1323882..1324724 (-)	843	WP_000911034.1	rod shape-determining protein MreC	-
E3S88_RS06460 (E3S88_06460)	-	1324922..1325041 (-)	120	WP_000840603.1	hypothetical protein	-
E3S88_RS06465 (E3S88_06465)	-	1325115..1325588 (-)	474	WP_001236734.1	DUF4930 family protein	-
E3S88_RS06470 (E3S88_06470)	-	1325748..1325945 (+)	198	WP_000025835.1	hypothetical protein	-
E3S88_RS06475 (E3S88_06475)	-	1326062..1326346 (-)	285	WP_000171859.1	hypothetical protein	-
E3S88_RS06480 (E3S88_06480)	ysxA/radC	1326414..1327100 (-)	687	WP_000692861.1	RadC family protein	Machinery gene
E3S88_RS06485 (E3S88_06485)	-	1327097..1327804 (-)	708	WP_000261110.1	prepilin peptidase	-
E3S88_RS06490 (E3S88_06490)	-	1328072..1329343 (-)	1272	WP_115390966.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
E3S88_RS06495 (E3S88_06495)	-	1329356..1331986 (-)	2631	WP_124780561.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25280.16 Da
• Isoelectric Point: 7.0537

>NTDB_id=362402 E3S88_RS06480 WP_000692861.1 1326414..1327100(-) (ysxA/radC) [Staphylococcus aureus strain UP_794]
MKIKEMVTSEKPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRADNNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=362402 E3S88_RS06480 WP_000692861.1 1326414..1327100(-) (ysxA/radC) [Staphylococcus aureus strain UP_794]
TTGAAAATTAAAGAAATGGTAACTTCAGAAAAGCCAAGAGAACGTTTATTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCAGCTTTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGATAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGCGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	53.125	98.246	0.522
radC	Streptococcus gordonii str. Challis substr. CH1	40.092	95.175	0.382
radC	Streptococcus pneumoniae TIGR4	41.148	91.667	0.377
radC	Streptococcus pneumoniae R6	40.67	91.667	0.373
radC	Streptococcus pneumoniae D39	40.67	91.667	0.373