Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GALLO_RS00720 Genome accession   NC_013798
Coordinates   112697..113092 (+) Length   131 a.a.
NCBI ID   WP_012961335.1    Uniprot ID   A0AA36JVW5
Organism   Streptococcus gallolyticus UCN34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107697..118092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GALLO_RS00690 (GALLO_0099) - 107842..108480 (+) 639 WP_009853241.1 CPBP family intramembrane glutamic endopeptidase -
  GALLO_RS00695 (GALLO_0100) proC 108540..109310 (-) 771 WP_009853242.1 pyrroline-5-carboxylate reductase -
  GALLO_RS00700 (GALLO_0101) pepA 109371..110438 (-) 1068 WP_009853243.1 glutamyl aminopeptidase -
  GALLO_RS11650 (GALLO_0103) - 110717..110848 (+) 132 WP_009853245.1 DUF4651 domain-containing protein -
  GALLO_RS00705 (GALLO_0104) - 110841..111158 (+) 318 WP_009853246.1 thioredoxin family protein -
  GALLO_RS00710 (GALLO_0105) ytpR 111167..111793 (+) 627 WP_009853247.1 YtpR family tRNA-binding protein -
  GALLO_RS00715 (GALLO_0107) - 111880..112585 (-) 706 Protein_104 class I SAM-dependent methyltransferase -
  GALLO_RS00720 (GALLO_0108) ssbA 112697..113092 (+) 396 WP_012961335.1 single-stranded DNA-binding protein Machinery gene
  GALLO_RS00725 (GALLO_0109) - 113242..114285 (+) 1044 WP_009853251.1 YeeE/YedE family protein -
  GALLO_RS00730 (GALLO_0110) - 114288..114515 (+) 228 WP_009853252.1 sulfurtransferase TusA family protein -
  GALLO_RS00735 (GALLO_0111) - 114643..115443 (+) 801 WP_012961336.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14831.78 Da        Isoelectric Point: 5.7866

>NTDB_id=36173 GALLO_RS00720 WP_012961335.1 112697..113092(+) (ssbA) [Streptococcus gallolyticus UCN34]
MYNKVIIIGRLTAQPELVTTSNEKSVTRVTLAVNRRFKSQNGDREADFISVVVWGRLAETLVSYAGKGSLLSVDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRAMRENNVANDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=36173 GALLO_RS00720 WP_012961335.1 112697..113092(+) (ssbA) [Streptococcus gallolyticus UCN34]
ATGTACAATAAAGTTATTATAATCGGGCGCTTGACAGCGCAGCCTGAGCTTGTGACGACGTCAAATGAAAAATCTGTTAC
ACGTGTAACACTAGCAGTCAACCGCCGTTTTAAATCACAAAATGGTGATCGTGAGGCGGATTTTATTTCAGTTGTGGTTT
GGGGACGTTTGGCAGAAACTCTTGTTTCTTATGCTGGAAAAGGTAGTTTGCTTTCAGTAGATGGCGAGCTTCGCACACGC
AAATATGAAAAAGATGGTCACACGAATTATGTGACAGAAGTGCTTTGCCATTCTTTCCAACTTTTAGAAAGCCGTGCCCA
ACGTGCCATGCGAGAAAATAATGTGGCAAACGATCTCGCTGATTTAGTTTTAGAAGAGGAAGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

79.389

100

0.794
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae Rx1

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae D39

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae R6

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

76.336

100

0.763
  ssbB/cilA Streptococcus mitis SK321

75.573

100

0.756
  ssbB/cilA Streptococcus mitis NCTC 12261

74.809

100

0.748
  ssbB Lactococcus lactis subsp. cremoris KW2

61.404

87.023

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

47.009

89.313

0.42
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412

Multiple sequence alignment