Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FCN25_RS11010 Genome accession   NZ_CP039928
Coordinates   2471222..2472490 (-) Length   422 a.a.
NCBI ID   WP_137224698.1    Uniprot ID   -
Organism   Shewanella sp. MEBiC00475     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2466222..2477490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCN25_RS10985 mutT 2468252..2468650 (-) 399 WP_137224688.1 8-oxo-dGTP diphosphatase MutT -
  FCN25_RS10990 yacG 2468662..2468874 (-) 213 WP_137224690.1 DNA gyrase inhibitor YacG -
  FCN25_RS10995 zapD 2468917..2469651 (-) 735 WP_137224692.1 cell division protein ZapD -
  FCN25_RS11000 coaE 2469644..2470273 (-) 630 WP_137224694.1 dephospho-CoA kinase -
  FCN25_RS11005 pilD 2470270..2471196 (-) 927 WP_137224696.1 A24 family peptidase Machinery gene
  FCN25_RS11010 pilC 2471222..2472490 (-) 1269 WP_137224698.1 type II secretion system F family protein Machinery gene
  FCN25_RS11015 pilB 2472598..2474304 (-) 1707 WP_137224700.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FCN25_RS11020 pilA/pilAI 2474410..2474838 (-) 429 WP_137224702.1 pilin Machinery gene
  FCN25_RS11025 nadC 2475801..2476679 (-) 879 WP_137224704.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FCN25_RS11030 ampD 2476888..2477442 (+) 555 WP_137224706.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46499.85 Da        Isoelectric Point: 10.3416

>NTDB_id=361010 FCN25_RS11010 WP_137224698.1 2471222..2472490(-) (pilC) [Shewanella sp. MEBiC00475]
MATTTAKRKPKSKVKKTTKHQPKVFTYQWKGINRDGQRTSGELKGSTIAEIRSVLKAQGVTPKGVRKKSAPLFKSEKSIT
AMDIAMITRQIATMLAAGVPLVTTIELLGRGHEKAKVRELLGTILSDVQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSG
SLDAVFDRIATYREKAEQLKSKIKKAMFYPAAVVIVAILVTSLLLLFVVPQFEEIFNGFGAELPAFTQLIIGISRWLQAS
WYFFVIAIVIGIWLFKRAHRTSQNFRDKIDQMVLRIPIIGNILHKAAMSRFARTLSTTFAAGVPLIDGLESAAGASGNYV
YRKALLKVRQEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGGLDEMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIG
TLVGGLIVGMYLPIFDMGNIVG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=361010 FCN25_RS11010 WP_137224698.1 2471222..2472490(-) (pilC) [Shewanella sp. MEBiC00475]
ATGGCCACAACAACAGCTAAAAGAAAGCCAAAGTCAAAGGTAAAAAAAACCACTAAACACCAACCTAAGGTATTTACCTA
CCAATGGAAAGGCATTAACCGCGATGGTCAGCGCACTTCGGGTGAGTTGAAAGGATCAACTATAGCTGAAATTCGCAGTG
TGTTAAAAGCCCAGGGTGTCACCCCCAAAGGCGTACGCAAGAAATCCGCACCGTTATTTAAATCTGAAAAAAGCATCACC
GCAATGGACATTGCGATGATCACTCGCCAAATAGCTACCATGCTGGCTGCTGGTGTACCTTTGGTCACAACTATCGAATT
ACTTGGCCGGGGCCATGAAAAAGCCAAAGTGCGCGAATTATTAGGTACCATTTTATCCGACGTCCAATCAGGTATTCCGC
TTTCAGATGCATTAAGACCTCACCGACGCTATTTTGATGATTTATACGTAGATTTAGTGGCAGCCGGCGAACATTCAGGC
TCACTCGATGCAGTATTTGACCGCATAGCTACCTATCGCGAAAAAGCCGAACAATTAAAGTCAAAAATCAAAAAAGCAAT
GTTTTATCCCGCTGCGGTAGTAATTGTTGCAATATTGGTAACTTCGCTACTACTATTATTTGTAGTACCGCAATTTGAAG
AGATTTTCAACGGCTTTGGCGCTGAACTGCCCGCGTTTACTCAGCTCATTATTGGTATATCTCGCTGGCTGCAAGCTTCA
TGGTATTTCTTTGTTATAGCCATTGTTATTGGTATTTGGCTGTTTAAACGAGCGCATCGTACGTCTCAAAATTTTCGCGA
TAAAATCGATCAAATGGTACTTAGAATCCCTATAATTGGTAATATTCTCCATAAGGCAGCGATGTCACGTTTTGCCCGCA
CCTTATCAACCACCTTTGCGGCGGGCGTACCATTAATAGATGGTTTAGAGTCCGCCGCAGGGGCATCAGGTAATTATGTT
TATCGCAAAGCATTATTAAAGGTACGTCAGGAAGTGATGTCTGGTATGCAAATGAATGTGGCCATGCGTACCACAGGCTT
ATTTCCTGACATGCTGATTCAGATGGTGATGATTGGGGAAGAGTCCGGCGGTTTAGATGAAATGTTGAACAAAGTCGCTA
ACATTTATGAAATGCAAGTGGATGATGCCGTTGATGGGTTATCAAGCTTAATCGAACCCATTATGATGGTGGTGATTGGG
ACTCTAGTCGGCGGTTTGATCGTCGGTATGTATTTACCTATTTTTGACATGGGTAATATTGTTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.418

93.602

0.5
  pilC Acinetobacter baylyi ADP1

49.265

96.682

0.476
  pilC Legionella pneumophila strain ERS1305867

49.257

95.735

0.472
  pilC Acinetobacter baumannii D1279779

48.492

94.313

0.457
  pilC Vibrio cholerae strain A1552

47.236

94.313

0.445
  pilC Vibrio campbellii strain DS40M4

45.025

95.261

0.429
  pilG Neisseria gonorrhoeae MS11

40.447

95.498

0.386
  pilG Neisseria meningitidis 44/76-A

41.667

90.995

0.379

Multiple sequence alignment