Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FCN25_RS11005 Genome accession   NZ_CP039928
Coordinates   2470270..2471196 (-) Length   308 a.a.
NCBI ID   WP_137224696.1    Uniprot ID   -
Organism   Shewanella sp. MEBiC00475     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2465270..2476196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCN25_RS10985 mutT 2468252..2468650 (-) 399 WP_137224688.1 8-oxo-dGTP diphosphatase MutT -
  FCN25_RS10990 yacG 2468662..2468874 (-) 213 WP_137224690.1 DNA gyrase inhibitor YacG -
  FCN25_RS10995 zapD 2468917..2469651 (-) 735 WP_137224692.1 cell division protein ZapD -
  FCN25_RS11000 coaE 2469644..2470273 (-) 630 WP_137224694.1 dephospho-CoA kinase -
  FCN25_RS11005 pilD 2470270..2471196 (-) 927 WP_137224696.1 A24 family peptidase Machinery gene
  FCN25_RS11010 pilC 2471222..2472490 (-) 1269 WP_137224698.1 type II secretion system F family protein Machinery gene
  FCN25_RS11015 pilB 2472598..2474304 (-) 1707 WP_137224700.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FCN25_RS11020 pilA/pilAI 2474410..2474838 (-) 429 WP_137224702.1 pilin Machinery gene

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34455.00 Da        Isoelectric Point: 8.3107

>NTDB_id=361009 FCN25_RS11005 WP_137224696.1 2470270..2471196(-) (pilD) [Shewanella sp. MEBiC00475]
MTEFISTFVTTMHQYHWVFIAISFIFAATIGSFLNVVIHRLPVMMKREWQSECNFYLNEYHPDIVKQVGNERLNKPIDQF
PVKYNIVVPGSACPKCKANIKPWHNLPILGWIMLKGKCADCKTSISSRYPIVELLTGALIATLAFYFGPTWQFVYASILT
FVLVALTGIDLDEMLLPDQLTLPILWLGLIINLKGIYASPEDAIIGAAAGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAV
FGAWLGWQMLPLIILLSSLVGAVVGITMIIAKKLNKGNPIPFGPYIAAAGWIALVWGQDILNWYLSTL

Nucleotide


Download         Length: 927 bp        

>NTDB_id=361009 FCN25_RS11005 WP_137224696.1 2470270..2471196(-) (pilD) [Shewanella sp. MEBiC00475]
ATGACTGAATTTATCTCAACTTTTGTAACAACAATGCACCAGTACCATTGGGTATTTATCGCAATTAGCTTTATTTTTGC
TGCCACCATTGGCAGTTTTCTCAATGTGGTGATTCACCGTTTACCAGTAATGATGAAACGAGAATGGCAAAGTGAATGTA
ACTTCTACCTCAATGAATACCATCCAGATATTGTTAAACAGGTGGGTAATGAGCGCTTAAATAAACCTATCGATCAATTC
CCAGTAAAATACAATATTGTGGTACCCGGCTCTGCATGCCCAAAATGCAAAGCCAATATTAAACCTTGGCATAATCTCCC
CATATTAGGTTGGATAATGCTTAAGGGTAAATGCGCCGATTGCAAAACCAGTATTTCAAGCCGCTATCCCATTGTCGAAC
TATTAACTGGGGCATTAATCGCCACCTTAGCTTTCTATTTTGGCCCAACATGGCAGTTTGTGTATGCCAGTATTTTAACG
TTCGTGTTGGTTGCATTAACAGGAATAGATCTAGACGAAATGCTATTACCCGACCAACTGACATTACCAATATTGTGGTT
AGGGTTAATTATTAACCTTAAAGGGATTTATGCTAGCCCTGAAGATGCCATTATTGGCGCTGCTGCAGGTTATTTAAGTT
TATGGTCGGTATTCTGGTTATTTAAACTGGTTACCGGCAAAGAAGGCATGGGATACGGCGACTTTAAACTGTTAGCGGTA
TTCGGTGCTTGGTTAGGTTGGCAAATGCTGCCATTAATTATTCTATTATCTTCACTGGTTGGTGCTGTGGTAGGTATAAC
GATGATCATCGCTAAAAAGCTCAATAAAGGTAATCCAATTCCTTTTGGTCCTTATATCGCTGCAGCGGGTTGGATAGCGT
TGGTCTGGGGGCAAGATATTCTTAACTGGTATCTAAGTACCTTATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-146)

Type IV leader peptidase family (Peptidase_A24)

(158-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

48.052

100

0.481
  pilD Vibrio campbellii strain DS40M4

48.505

97.727

0.474
  pilD Vibrio cholerae strain A1552

48.814

95.779

0.468
  pilD Acinetobacter nosocomialis M2

47.213

99.026

0.468
  pilD Neisseria gonorrhoeae MS11

43.299

94.481

0.409

Multiple sequence alignment