Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FCM34_RS19625 Genome accession   NZ_CP039832
Coordinates   4195268..4196509 (+) Length   413 a.a.
NCBI ID   WP_143238137.1    Uniprot ID   -
Organism   Aeromonas caviae strain WCW1-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4190268..4201509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCM34_RS19605 (FCM34_19605) nadC 4190512..4191375 (+) 864 WP_042864860.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FCM34_RS19610 (FCM34_19610) - 4191860..4192840 (-) 981 WP_221933459.1 IS5-like element IS5 family transposase -
  FCM34_RS19615 (FCM34_19615) - 4192921..4193430 (+) 510 WP_143238135.1 pilus assembly protein TapA -
  FCM34_RS19620 (FCM34_19620) pilB 4193434..4195140 (+) 1707 WP_143238136.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  FCM34_RS19625 (FCM34_19625) pilC 4195268..4196509 (+) 1242 WP_143238137.1 type II secretion system F family protein Machinery gene
  FCM34_RS19630 (FCM34_19630) pilD 4196587..4197462 (+) 876 WP_143238138.1 prepilin peptidase Machinery gene
  FCM34_RS19635 (FCM34_19635) coaE 4197481..4198095 (+) 615 WP_042864857.1 dephospho-CoA kinase -
  FCM34_RS19640 (FCM34_19640) zapD 4198133..4198855 (+) 723 WP_010675825.1 cell division protein ZapD -
  FCM34_RS19645 (FCM34_19645) yacG 4198866..4199060 (+) 195 WP_010675826.1 DNA gyrase inhibitor YacG -
  FCM34_RS19650 (FCM34_19650) mutT 4199118..4199522 (-) 405 WP_171864957.1 8-oxo-dGTP diphosphatase MutT -
  FCM34_RS19655 (FCM34_19655) - 4199531..4200715 (-) 1185 WP_143238139.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45447.42 Da        Isoelectric Point: 9.9380

>NTDB_id=360684 FCM34_RS19625 WP_143238137.1 4195268..4196509(+) (pilC) [Aeromonas caviae strain WCW1-2]
MATLAQKRNAPKKVFSYRWHGVNRKGQKVSGELQADSIITVKAELRKQGVNVTRVSKQSQGLFSKGGAKIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKAAVRELIGQIAADVETGTPLSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
AIYREKNEALKSKIKKAMFYPSMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTRFVIAISRFMQEWWYAIFGGAA
LAVFLYVRAWRKSQKVRDNTDKFILTIPVVGNILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTATMAIR
NEVVAGMQINVAMRTVDLFPDMVTQMVMIGEESGAIDDMLSKVAAIFEQEVDDMVDGLTSLLEPIIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=360684 FCM34_RS19625 WP_143238137.1 4195268..4196509(+) (pilC) [Aeromonas caviae strain WCW1-2]
ATGGCCACATTAGCTCAAAAACGCAACGCACCGAAAAAAGTCTTCTCCTACCGCTGGCACGGCGTCAACCGCAAAGGACA
GAAGGTCTCCGGCGAGCTGCAAGCCGACAGCATCATCACCGTCAAGGCCGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
GGGTCAGCAAGCAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCATCTCCCGC
CAGATCACCACCATGCTCTCCGCCGGCGTGCCTCTGGTGCAGAGTCTTCAGATCATTGCTCGCGGCCACGAGAAAGCGGC
GGTGCGCGAACTCATCGGCCAGATCGCCGCCGATGTGGAAACGGGCACCCCGCTCTCGGAGGCGTTGCGCCGCCATCCCC
GCCACTTCGACGACCTCTATTGCGACCTGGTCGAGGCCGGGGAGCAATCCGGTGCCCTGGAGACCATCTACGACCGTATC
GCCATCTACCGCGAGAAGAACGAAGCCCTCAAATCCAAGATCAAGAAGGCCATGTTCTATCCGTCCATGGTCATTCTGGT
GGCCATCGTCGTCACCTCCATCCTGCTGCTCTTCGTCATTCCCCAGTTCGAGGATATCTTCAAGAGCTTCGGTGCCGAGC
TGCCCGCCTTCACCCGGTTCGTCATCGCCATCTCCCGCTTTATGCAGGAGTGGTGGTACGCCATCTTTGGCGGCGCTGCT
CTCGCCGTCTTCCTCTATGTGCGGGCCTGGCGAAAATCCCAGAAGGTCAGGGACAACACGGACAAGTTCATCCTCACCAT
TCCCGTGGTGGGCAACATACTGCACAAGGCGGCCATGGCCCGTTTTGCCCGCACCCTCTCCACCACCTTCTCCGCCGGTA
TCCCGCTGGTGGATGCCCTGGTCTCGGCGGCCGGAGCATCGGGCAACTATGTCTATCGCACTGCGACCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTCGCCATGCGCACCGTGGATCTTTTCCCCGACATGGTGACCCAGATGGT
GATGATCGGTGAGGAATCCGGCGCCATCGACGACATGCTCTCCAAGGTCGCCGCCATTTTCGAACAGGAGGTGGACGACA
TGGTCGACGGCCTCACCAGCCTGCTCGAACCCATCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTCGTGGCC
ATGTACCTCCCCATCTTCAAGCTGGGCTCTGTGATACACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.566

95.884

0.542
  pilC Legionella pneumophila strain ERS1305867

52.099

98.063

0.511
  pilC Acinetobacter baylyi ADP1

50.971

99.758

0.508
  pilC Acinetobacter baumannii D1279779

52.369

97.094

0.508
  pilC Vibrio cholerae strain A1552

47.619

96.61

0.46
  pilC Vibrio campbellii strain DS40M4

45.363

96.61

0.438
  pilG Neisseria meningitidis 44/76-A

41.602

93.705

0.39
  pilG Neisseria gonorrhoeae MS11

41.602

93.705

0.39
  pilC Thermus thermophilus HB27

38.75

96.852

0.375

Multiple sequence alignment