Detailed information NTG0360685

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FCM34_RS19630
• Genome accession: NZ_CP039832
• Coordinates: 4196587..4197462 (+)
• Length: 291 a.a.
• NCBI ID: WP_143238138.1
• Uniprot ID: -
• Organism: Aeromonas caviae strain WCW1-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4191587..4202462

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FCM34_RS19610 (FCM34_19610)	-	4191860..4192840 (-)	981	WP_221933459.1	IS5-like element IS5 family transposase	-
FCM34_RS19615 (FCM34_19615)	-	4192921..4193430 (+)	510	WP_143238135.1	pilus assembly protein TapA	-
FCM34_RS19620 (FCM34_19620)	pilB	4193434..4195140 (+)	1707	WP_143238136.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
FCM34_RS19625 (FCM34_19625)	pilC	4195268..4196509 (+)	1242	WP_143238137.1	type II secretion system F family protein	Machinery gene
FCM34_RS19630 (FCM34_19630)	pilD	4196587..4197462 (+)	876	WP_143238138.1	prepilin peptidase	Machinery gene
FCM34_RS19635 (FCM34_19635)	coaE	4197481..4198095 (+)	615	WP_042864857.1	dephospho-CoA kinase	-
FCM34_RS19640 (FCM34_19640)	zapD	4198133..4198855 (+)	723	WP_010675825.1	cell division protein ZapD	-
FCM34_RS19645 (FCM34_19645)	yacG	4198866..4199060 (+)	195	WP_010675826.1	DNA gyrase inhibitor YacG	-
FCM34_RS19650 (FCM34_19650)	mutT	4199118..4199522 (-)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
FCM34_RS19655 (FCM34_19655)	-	4199531..4200715 (-)	1185	WP_143238139.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32153.27 Da
• Isoelectric Point: 6.5959

>NTDB_id=360685 FCM34_RS19630 WP_143238138.1 4196587..4197462(+) (pilD) [Aeromonas caviae strain WCW1-2]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDDEETPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADAVIGTMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=360685 FCM34_RS19630 WP_143238138.1 4196587..4197462(+) (pilD) [Aeromonas caviae strain WCW1-2]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGTCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGATGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTGCCGCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCCCTGCTGTCGGTCTCGGTAGCAGCCGCGCTTGCCCCCGGCTGGG
GCACCCTTGCCGCTCTGCTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCTTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGCGGTGAT
CGGTACCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAAGAGGGGATGGGGT
ACGGGGATTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTGGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCAGGCGCTATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (140-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.764	98.969	0.601
pilD	Vibrio campbellii strain DS40M4	56.897	99.656	0.567
pilD	Acinetobacter baumannii D1279779	52.33	95.876	0.502
pilD	Acinetobacter nosocomialis M2	52.33	95.876	0.502
pilD	Neisseria gonorrhoeae MS11	51.321	91.065	0.467