Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   E8M06_RS00850 Genome accession   NZ_CP039462
Coordinates   136345..136740 (+) Length   131 a.a.
NCBI ID   WP_014637328.1    Uniprot ID   G7SD76
Organism   Streptococcus suis strain WUSS351     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 131345..141740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M06_RS00820 (E8M06_00820) pepA 131960..133021 (-) 1062 WP_044694035.1 glutamyl aminopeptidase -
  E8M06_RS00825 (E8M06_00825) - 133234..133518 (+) 285 WP_024383185.1 DUF4651 domain-containing protein -
  E8M06_RS00830 (E8M06_00830) - 133515..133835 (+) 321 WP_024388908.1 thioredoxin family protein -
  E8M06_RS00835 (E8M06_00835) - 133880..134836 (+) 957 WP_136581018.1 DUF1002 domain-containing protein -
  E8M06_RS00840 (E8M06_00840) ytpR 134855..135478 (+) 624 WP_136581019.1 YtpR family tRNA-binding protein -
  E8M06_RS00845 (E8M06_00845) - 135511..136290 (-) 780 WP_136581020.1 DUF2785 domain-containing protein -
  E8M06_RS00850 (E8M06_00850) ssbA 136345..136740 (+) 396 WP_014637328.1 single-stranded DNA-binding protein Machinery gene
  E8M06_RS11160 - 137207..137374 (-) 168 WP_168800235.1 hypothetical protein -
  E8M06_RS00860 (E8M06_00860) groES 137571..137852 (+) 282 WP_014637330.1 co-chaperone GroES -
  E8M06_RS00865 (E8M06_00865) groL 137863..139485 (+) 1623 WP_024393522.1 chaperonin GroEL -
  E8M06_RS00870 (E8M06_00870) rpsL 139716..140129 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  E8M06_RS00875 (E8M06_00875) rpsG 140146..140616 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14866.76 Da        Isoelectric Point: 5.0026

>NTDB_id=358834 E8M06_RS00850 WP_014637328.1 136345..136740(+) (ssbA) [Streptococcus suis strain WUSS351]
MYNKVILIGRLTAQPELTQTPTGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=358834 E8M06_RS00850 WP_014637328.1 136345..136740(+) (ssbA) [Streptococcus suis strain WUSS351]
ATGTATAATAAAGTTATTTTGATCGGTCGCTTGACGGCCCAACCCGAACTCACTCAAACACCAACTGGCAAAAATTTGAC
TCGTGTAACAGTCGCAGTCAATCGCCGATTTAAGACTGAAAATGGTGAGCGTGAAGCAGATTTTCTTAATGTTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTCTCCTATGGTAGCAAGGGTAGTCTGATTTCTATTGACGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACAGAAATCTTAGGACAATCCTTCCAGTTGCTCGAAAGCCGTGCCCA
ACGTGCCATGCGTGAAAACAATACTGGTGATGACCTAGCTGACTTGGTTCTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SD76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382

Multiple sequence alignment