Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   E6P07_RS02725 Genome accession   NZ_CP039268
Coordinates   581285..582535 (-) Length   416 a.a.
NCBI ID   WP_153974191.1    Uniprot ID   -
Organism   Thermochromatium tepidum ATCC 43061     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 576285..587535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6P07_RS02700 (E6P07_02700) ruvA 576663..577289 (+) 627 WP_153974186.1 Holliday junction branch migration protein RuvA -
  E6P07_RS02705 (E6P07_02705) - 577394..579064 (+) 1671 WP_153974187.1 sensor domain-containing diguanylate cyclase -
  E6P07_RS02710 (E6P07_02710) - 579285..579629 (-) 345 WP_153974188.1 hypothetical protein -
  E6P07_RS02715 (E6P07_02715) coaE 579746..580372 (-) 627 WP_153974189.1 dephospho-CoA kinase -
  E6P07_RS02720 (E6P07_02720) pilD 580369..581259 (-) 891 WP_153974190.1 A24 family peptidase Machinery gene
  E6P07_RS02725 (E6P07_02725) pilC 581285..582535 (-) 1251 WP_153974191.1 type II secretion system F family protein Machinery gene
  E6P07_RS02730 (E6P07_02730) pilB 582556..584271 (-) 1716 WP_153974192.1 type IV-A pilus assembly ATPase PilB Machinery gene
  E6P07_RS02735 (E6P07_02735) - 584297..585130 (-) 834 WP_211363158.1 NYN domain-containing protein -
  E6P07_RS02740 (E6P07_02740) acs 585359..587305 (-) 1947 WP_153974194.1 acetate--CoA ligase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45302.48 Da        Isoelectric Point: 9.7880

>NTDB_id=357729 E6P07_RS02725 WP_153974191.1 581285..582535(-) (pilC) [Thermochromatium tepidum ATCC 43061]
MAVATTTKAKPKPKPEEARIFIWEGTDRRGARLKGESRATDINTVRADLRRQGVNPISVKVKPKPLFGSGKRKITSQDLS
VFTRQLATMMSAGVPLVQAFDIVGRGHENPKMQDIILAIKQDIESGTAMSVALAKYPIYFDDLMCSLVAAGEQAGVLDVL
LDKIATYKEKTESIKGKIKKALFYPAAVIVVAIVVTVVILLFVIPQFKELFTSFGADLPAFTLMVIGLSDIIREWWWAFI
FGLAALSYAISSAFKRSRAFREMVDRLSLKIPIIGPILNKAAIARFARTLSTMFAAGVPLVEALQSVAGATGNAIYQEAV
LKMRENVATGQSLQLAMRQLDLFPHMVVQMTAIGEESGALDDMLGKVADFYEEQVDNAVDALSSLLEPMIMVVIGGLVGS
LVVAMYLPIFKLASVV

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=357729 E6P07_RS02725 WP_153974191.1 581285..582535(-) (pilC) [Thermochromatium tepidum ATCC 43061]
ATGGCCGTTGCCACCACGACTAAAGCGAAGCCAAAACCCAAGCCCGAAGAGGCCAGGATCTTCATCTGGGAGGGCACCGA
CAGGCGCGGGGCGCGGCTCAAGGGCGAGTCGCGCGCCACCGACATCAATACGGTGCGCGCCGATCTACGTCGCCAGGGCG
TCAACCCAATCAGTGTCAAGGTCAAGCCCAAGCCGCTGTTCGGCAGCGGCAAGAGGAAGATCACGAGTCAGGATCTCTCG
GTCTTCACCCGTCAGCTCGCCACCATGATGTCGGCGGGTGTGCCCCTGGTGCAGGCCTTCGACATCGTCGGGCGCGGACA
CGAAAACCCGAAGATGCAAGACATCATCCTGGCGATCAAGCAGGACATCGAGAGCGGTACGGCGATGTCTGTTGCACTGG
CCAAGTATCCAATCTATTTCGACGATCTGATGTGCAGCCTGGTCGCGGCCGGCGAGCAGGCCGGTGTGCTCGATGTGCTG
CTCGACAAGATCGCGACCTATAAGGAAAAGACCGAGTCGATCAAGGGCAAGATCAAAAAGGCGCTTTTCTATCCGGCCGC
CGTCATCGTGGTGGCGATCGTGGTCACCGTGGTCATCCTGCTGTTCGTCATCCCCCAGTTCAAGGAACTGTTCACCAGCT
TCGGCGCCGATCTGCCGGCCTTCACCCTCATGGTCATCGGCCTGTCGGACATCATCCGGGAGTGGTGGTGGGCATTCATC
TTCGGGTTGGCGGCGCTCTCCTACGCGATCAGCTCGGCCTTCAAGCGCTCTAGGGCCTTCCGCGAGATGGTGGACCGGCT
CAGCCTCAAGATCCCGATCATAGGCCCGATCCTGAACAAGGCGGCCATCGCCCGCTTTGCGCGCACCCTCTCGACCATGT
TTGCCGCCGGTGTGCCCCTGGTCGAGGCGCTACAATCCGTGGCCGGGGCCACGGGCAATGCCATCTATCAGGAGGCGGTG
CTGAAGATGCGCGAGAACGTGGCGACCGGTCAGTCGCTGCAACTGGCCATGCGGCAACTCGATCTCTTCCCACACATGGT
CGTGCAGATGACAGCGATCGGCGAGGAGTCGGGCGCGCTCGACGACATGCTGGGCAAGGTCGCCGATTTCTACGAAGAGC
AGGTCGATAACGCGGTTGATGCACTGAGTAGTCTGCTGGAGCCCATGATCATGGTGGTGATCGGCGGTCTGGTCGGCAGC
CTGGTGGTGGCCATGTATCTGCCAATCTTCAAGCTGGCCTCGGTCGTCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(286-408)

Type II secretion system (T2SS), protein F (T2SSF)

(82-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

57.323

95.192

0.546
  pilC Pseudomonas stutzeri DSM 10701

55.919

95.433

0.534
  pilC Acinetobacter baumannii D1279779

55.668

95.433

0.531
  pilC Acinetobacter baylyi ADP1

54.774

95.673

0.524
  pilG Neisseria meningitidis 44/76-A

48.13

96.394

0.464
  pilG Neisseria gonorrhoeae MS11

47.487

95.673

0.454
  pilC Vibrio campbellii strain DS40M4

43.719

95.673

0.418
  pilC Vibrio cholerae strain A1552

41.667

95.192

0.397
  pilC Thermus thermophilus HB27

38.095

95.913

0.365

Multiple sequence alignment