Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   E5Y90_RS12645 Genome accession   NZ_CP039143
Coordinates   2666395..2667624 (+) Length   409 a.a.
NCBI ID   WP_174660362.1    Uniprot ID   -
Organism   Acinetobacter sp. 10FS3-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2661395..2672624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Y90_RS12600 (E5Y90_12645) rimP 2661758..2662282 (-) 525 WP_151204970.1 ribosome maturation factor RimP -
  E5Y90_RS12630 (E5Y90_12675) secG 2663233..2663562 (-) 330 WP_174660359.1 preprotein translocase subunit SecG -
  E5Y90_RS12635 (E5Y90_12680) tpiA 2663576..2664367 (-) 792 WP_174660360.1 triose-phosphate isomerase -
  E5Y90_RS12640 (E5Y90_12685) pilB 2664648..2666363 (+) 1716 WP_174660361.1 type IV-A pilus assembly ATPase PilB Machinery gene
  E5Y90_RS12645 (E5Y90_12690) pilC 2666395..2667624 (+) 1230 WP_174660362.1 type II secretion system F family protein Machinery gene
  E5Y90_RS12650 (E5Y90_12695) pilD 2667624..2668484 (+) 861 WP_151204975.1 prepilin peptidase Machinery gene
  E5Y90_RS12655 (E5Y90_12700) coaE 2668486..2669103 (+) 618 WP_174660363.1 dephospho-CoA kinase -
  E5Y90_RS12660 (E5Y90_12705) - 2669325..2670248 (-) 924 WP_174660364.1 DMT family transporter -
  E5Y90_RS12665 (E5Y90_12710) rlmB 2670255..2671004 (-) 750 WP_174660365.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E5Y90_RS12670 (E5Y90_12715) - 2671147..2671470 (-) 324 WP_151205572.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45067.54 Da        Isoelectric Point: 9.8207

>NTDB_id=357223 E5Y90_RS12645 WP_174660362.1 2666395..2667624(+) (pilC) [Acinetobacter sp. 10FS3-1]
MAAVKKGQMMPVFSYEGIDRKGVKIKGELPARNMALAKVNLRKQGISIKTIRQKRKNILEGLMKKRVSTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPIAVIVVAVIVTIILMVKVVPVFQELFSSFGADLPAFTQMVVNMSEWMQKYWFLMIIAIAVAI
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDV
ATGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=357223 E5Y90_RS12645 WP_174660362.1 2666395..2667624(+) (pilC) [Acinetobacter sp. 10FS3-1]
ATGGCGGCAGTAAAAAAAGGCCAGATGATGCCGGTCTTCAGTTATGAAGGCATTGATCGCAAAGGGGTGAAGATCAAGGG
GGAATTACCGGCACGCAATATGGCGCTGGCAAAAGTCAACTTGAGAAAACAAGGCATCAGCATCAAGACTATTCGACAGA
AGAGAAAGAATATTCTTGAAGGCTTGATGAAAAAACGGGTCAGCACCCTGGATATCACGATTTTTACCCGGCAGCTGGCG
ACCATGATGAAAGCGGGTGTACCGTTGGTTCAAGGCTTTGAAATCGTGGCAGAGGGACTAGAAAACCCCGCTATGCGTGA
AGTCGTGCTTGGTATTAAAGGAGAGGTCGAAGGCGGTAATACCTTTGCAGGTGCCTTACGTAAATATCCACAGTATTTTG
ACAATCTGTTCTGTTCGCTGGTGGAATCCGGTGAGCAGTCGGGTGCTCTGGAAACCATGCTCGACCGTGTCGCCATCTAT
AAAGAAAAGAGCGAGCTGCTAAAGCAGAAGATTAAAAAGGCCATGAAATATCCCATTGCAGTCATCGTTGTTGCTGTAAT
CGTGACTATTATTCTGATGGTTAAGGTCGTACCGGTCTTCCAGGAGTTGTTCTCCTCCTTCGGCGCCGATTTGCCTGCCT
TTACCCAGATGGTGGTGAATATGTCAGAGTGGATGCAGAAGTATTGGTTCCTGATGATTATTGCCATTGCAGTTGCTATT
ACCGCATTTCTGGAAGCCAAGAAACGCAGTAAAAAATTCCGGGACTTTCTGGATAAAGCTGCACTTAAGGCACCGATTTT
TGGTGACCTGGTTTATAAAGCGATTATTGCCCGTTATAGCCGTACCTTGTCGACGACTTTTGCTGCCGGTGTCCCACTGA
TTGATGCATTAGAATCGACAGCTGGAGCGACTAATAATGTGGTCTATGAAGATGCAGTCATGAAAATTCGCGAAGATGTC
GCAACCGGGCAGCAGCTGCAATTTGCCATGCGTGTGACTGACAAGTTTCCTTCTATGGCCGTACAAATGGTCGCAATTGG
TGAAGAATCAGGCGCCCTAGATGCCATGCTGGATAAAGTGGCAACCCACTATGAAAATGAAGTCGATAATGCTGTCGATG
GTCTTACTTCCATGATGGAGCCTCTGATTATGGCCATTCTGGGTGTGCTGGTCGGTGGTCTGGTGATTGCCATGTATCTT
CCAATCTTCCAAATGGGCTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.189

99.511

0.888
  pilC Acinetobacter baylyi ADP1

82.555

99.511

0.822
  pilC Pseudomonas stutzeri DSM 10701

62.563

97.311

0.609
  pilC Legionella pneumophila strain ERS1305867

54.408

97.066

0.528
  pilG Neisseria meningitidis 44/76-A

46.617

97.555

0.455
  pilG Neisseria gonorrhoeae MS11

46.617

97.555

0.455
  pilC Vibrio cholerae strain A1552

43.627

99.756

0.435
  pilC Vibrio campbellii strain DS40M4

41.709

97.311

0.406
  pilC Thermus thermophilus HB27

36.543

99.022

0.362

Multiple sequence alignment