Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SaO82_RS09840 Genome accession   NZ_CP038819
Coordinates   1954493..1954918 (-) Length   141 a.a.
NCBI ID   WP_000934785.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O82     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1917908..1964175 1954493..1954918 within 0


Gene organization within MGE regions


Location: 1917908..1964175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO82_RS09605 (SaO82_1796) - 1919575..1920090 (-) 516 WP_000163283.1 type 1 glutamine amidotransferase domain-containing protein -
  SaO82_RS09610 (SaO82_1797) - 1920220..1920381 (-) 162 WP_001005407.1 SE1561 family protein -
  SaO82_RS09615 - 1920708..1920809 (+) 102 WP_101305152.1 hypothetical protein -
  SaO82_RS09620 (SaO82_1798) - 1920854..1921855 (-) 1002 WP_000593870.1 restriction endonuclease subunit S -
  SaO82_RS14175 - 1921839..1923068 (-) 1230 WP_247595148.1 N-6 DNA methylase -
  SaO82_RS14180 - 1923087..1923731 (-) 645 WP_247595149.1 hypothetical protein -
  SaO82_RS09635 (SaO82_1801) lukF' 1924241..1925209 (-) 969 WP_000669582.1 bi-component leukocidin LukMF' subunit F' -
  SaO82_RS09640 (SaO82_1802) lukM 1925211..1926137 (-) 927 WP_000476436.1 bi-component leukocidin LukMF' subunit M -
  SaO82_RS09645 (SaO82_1803) - 1926485..1927186 (-) 702 WP_247595156.1 CHAP domain-containing protein -
  SaO82_RS09650 (SaO82_1804) - 1927252..1927506 (-) 255 WP_000611513.1 phage holin -
  SaO82_RS09655 - 1927558..1927661 (+) 104 Protein_1808 hypothetical protein -
  SaO82_RS09660 - 1927704..1927811 (-) 108 WP_000255427.1 putative holin-like toxin -
  SaO82_RS09665 (SaO82_1805) - 1928045..1928341 (-) 297 WP_000539688.1 DUF2951 domain-containing protein -
  SaO82_RS09670 (SaO82_1806) - 1928399..1928686 (-) 288 WP_001040261.1 hypothetical protein -
  SaO82_RS09675 - 1928733..1928885 (-) 153 WP_001153680.1 hypothetical protein -
  SaO82_RS09680 (SaO82_1807) - 1928875..1932660 (-) 3786 WP_136142637.1 phage tail spike protein -
  SaO82_RS09685 (SaO82_1808) - 1932676..1934166 (-) 1491 Protein_1814 phage tail domain-containing protein -
  SaO82_RS09690 (SaO82_1809) - 1934166..1938815 (-) 4650 WP_136142638.1 phage tail tape measure protein -
  SaO82_RS09695 - 1938872..1938994 (-) 123 WP_000571956.1 hypothetical protein -
  SaO82_RS09700 (SaO82_1810) - 1939054..1939500 (-) 447 WP_136142639.1 hypothetical protein -
  SaO82_RS09705 (SaO82_1811) - 1939565..1940518 (-) 954 WP_000570651.1 major tail protein -
  SaO82_RS09710 (SaO82_1812) - 1940519..1940899 (-) 381 WP_000611451.1 hypothetical protein -
  SaO82_RS09715 (SaO82_1813) - 1940896..1941273 (-) 378 WP_000501244.1 HK97-gp10 family putative phage morphogenesis protein -
  SaO82_RS09720 (SaO82_1814) - 1941273..1941608 (-) 336 WP_025174659.1 head-tail adaptor protein -
  SaO82_RS09725 (SaO82_1815) - 1941595..1941927 (-) 333 WP_001177485.1 head-tail connector protein -
  SaO82_RS09730 (SaO82_1816) - 1941936..1942094 (-) 159 WP_001252099.1 hypothetical protein -
  SaO82_RS09735 (SaO82_1817) - 1942130..1943377 (-) 1248 WP_000849948.1 phage major capsid protein -
  SaO82_RS09740 (SaO82_1818) - 1943465..1944049 (-) 585 WP_000032523.1 HK97 family phage prohead protease -
  SaO82_RS09745 (SaO82_1819) - 1944042..1945292 (-) 1251 WP_000511061.1 phage portal protein -
  SaO82_RS09750 (SaO82_1820) - 1945298..1945498 (-) 201 WP_000365298.1 hypothetical protein -
  SaO82_RS09755 (SaO82_1821) - 1945512..1947206 (-) 1695 WP_136142640.1 phage terminase family protein -
  SaO82_RS09760 (SaO82_1822) - 1947209..1947676 (-) 468 WP_000919023.1 phage terminase small subunit P27 family -
  SaO82_RS09765 (SaO82_1823) - 1947805..1948149 (-) 345 WP_001803930.1 HNH endonuclease -
  SaO82_RS09770 (SaO82_1824) - 1948165..1948617 (-) 453 WP_000406189.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  SaO82_RS09775 (SaO82_1825) - 1948732..1949193 (-) 462 WP_000282752.1 hypothetical protein -
  SaO82_RS09780 (SaO82_1826) - 1949216..1949416 (-) 201 WP_000265040.1 DUF1514 family protein -
  SaO82_RS09785 (SaO82_1827) - 1949416..1950066 (-) 651 WP_001005261.1 hypothetical protein -
  SaO82_RS09790 (SaO82_1828) - 1950225..1950374 (-) 150 WP_000595250.1 transcriptional activator RinB -
  SaO82_RS09795 (SaO82_1829) - 1950371..1950577 (-) 207 WP_000195765.1 DUF1381 domain-containing protein -
  SaO82_RS09800 (SaO82_1830) - 1950614..1951126 (-) 513 WP_136142641.1 dUTPase -
  SaO82_RS09805 (SaO82_1831) - 1951119..1951361 (-) 243 WP_136142642.1 hypothetical protein -
  SaO82_RS09810 (SaO82_1832) - 1951361..1951603 (-) 243 WP_136142643.1 DUF1024 family protein -
  SaO82_RS09815 (SaO82_1833) - 1951596..1951886 (-) 291 WP_001804359.1 hypothetical protein -
  SaO82_RS09820 (SaO82_1834) - 1951895..1952137 (-) 243 WP_000131362.1 SAV1978 family virulence-associated passenger protein -
  SaO82_RS09825 (SaO82_1835) - 1952212..1952976 (-) 765 Protein_1842 ATP-binding protein -
  SaO82_RS09830 (SaO82_1836) - 1952989..1953812 (-) 824 Protein_1843 phage replisome organizer N-terminal domain-containing protein -
  SaO82_RS09835 (SaO82_1837) - 1953784..1954479 (-) 696 WP_001121801.1 putative HNHc nuclease -
  SaO82_RS09840 (SaO82_1838) ssbA 1954493..1954918 (-) 426 WP_000934785.1 single-stranded DNA-binding protein Machinery gene
  SaO82_RS09845 (SaO82_1839) - 1954918..1955556 (-) 639 WP_001043063.1 ERF family protein -
  SaO82_RS09850 (SaO82_1840) - 1955556..1956035 (-) 480 WP_000002514.1 siphovirus Gp157 family protein -
  SaO82_RS09855 (SaO82_1841) - 1956050..1956310 (-) 261 WP_000291086.1 DUF1108 family protein -
  SaO82_RS09860 (SaO82_1842) - 1956405..1956566 (-) 162 WP_000048119.1 DUF1270 family protein -
  SaO82_RS09865 (SaO82_1843) - 1956559..1956780 (-) 222 WP_000594788.1 hypothetical protein -
  SaO82_RS09870 (SaO82_1844) - 1956851..1957063 (+) 213 WP_000461464.1 hypothetical protein -
  SaO82_RS14185 - 1957078..1957155 (-) 78 Protein_1852 hypothetical protein -
  SaO82_RS09875 (SaO82_1845) - 1957171..1957920 (-) 750 WP_065316555.1 phage antirepressor KilAC domain-containing protein -
  SaO82_RS09880 (SaO82_1846) - 1957981..1958223 (+) 243 WP_000498529.1 hypothetical protein -
  SaO82_RS09885 - 1958171..1958479 (-) 309 WP_001025399.1 hypothetical protein -
  SaO82_RS09890 (SaO82_1847) - 1958495..1958764 (-) 270 WP_000854067.1 helix-turn-helix transcriptional regulator -
  SaO82_RS09895 - 1958783..1958935 (-) 153 Protein_1857 transcriptional regulator -
  SaO82_RS09900 (SaO82_1848) - 1958898..1959611 (+) 714 WP_001031451.1 XRE family transcriptional regulator -
  SaO82_RS14010 (SaO82_1849) - 1959623..1959769 (+) 147 WP_001049401.1 hypothetical protein -
  SaO82_RS09905 (SaO82_1850) - 1959766..1959951 (+) 186 WP_000100503.1 hypothetical protein -
  SaO82_RS09910 (SaO82_1851) - 1959987..1960970 (+) 984 WP_136142645.1 DUF3644 domain-containing protein -
  SaO82_RS09915 (SaO82_1852) - 1961149..1962195 (+) 1047 WP_001145719.1 tyrosine-type recombinase/integrase -
  SaO82_RS09920 (SaO82_1853) yfkAB 1962240..1963385 (+) 1146 WP_136142646.1 radical SAM/CxCxxxxC motif protein YfkAB -
  SaO82_RS09925 (SaO82_1854) - 1963645..1964175 (-) 531 WP_000184381.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15949.37 Da        Isoelectric Point: 4.6952

>NTDB_id=355820 SaO82_RS09840 WP_000934785.1 1954493..1954918(-) (ssbA) [Staphylococcus aureus strain O82]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYQQQGQTQTGNNPFDNTEEDFSDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=355820 SaO82_RS09840 WP_000934785.1 1954493..1954918(-) (ssbA) [Staphylococcus aureus strain O82]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCAACAACAAGGACAAACTCAAACTGGTAATAATCCGTTCGACAATACCGAAG
AAGACTTTTCTGACTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

81.308

75.887

0.617
  ssb Latilactobacillus sakei subsp. sakei 23K

55.263

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

75.177

0.44
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.826

81.56

0.39
  ssbA Streptococcus mutans UA159

46.957

81.56

0.383
  ssbB/cilA Streptococcus mitis NCTC 12261

45.763

83.688

0.383
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.763

83.688

0.383
  ssbB/cilA Streptococcus pneumoniae Rx1

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae D39

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae R6

44.915

83.688

0.376
  ssbB/cilA Streptococcus mitis SK321

44.915

83.688

0.376

Multiple sequence alignment