Detailed information NTG0035579

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BAMTA208_RS14705
• Genome accession: NC_017188
• Coordinates: 2902224..2903354 (-)
• Length: 376 a.a.
• NCBI ID: WP_013353308.1
• Uniprot ID: A0A9P1JJI8
• Organism: Bacillus amyloliquefaciens TA208
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2897224..2908354

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMTA208_RS14675 (BAMTA208_15155)	-	2897439..2898107 (+)	669	WP_013353302.1	potassium channel family protein	-
BAMTA208_RS14680 (BAMTA208_15160)	-	2898131..2898976 (-)	846	WP_013353303.1	glucosaminidase domain-containing protein	-
BAMTA208_RS14685 (BAMTA208_15165)	hmpA	2899116..2900291 (-)	1176	WP_013353304.1	NO-inducible flavohemoprotein	-
BAMTA208_RS14690	-	2900508..2901148 (+)	641	Protein_2929	cupin domain-containing protein	-
BAMTA208_RS14695 (BAMTA208_15180)	-	2901208..2901531 (-)	324	WP_013353306.1	hypothetical protein	-
BAMTA208_RS14705 (BAMTA208_15205)	rapC	2902224..2903354 (-)	1131	WP_013353308.1	tetratricopeptide repeat protein	Regulator
BAMTA208_RS14710 (BAMTA208_15210)	-	2903742..2903945 (+)	204	WP_014470862.1	hypothetical protein	-
BAMTA208_RS14720 (BAMTA208_15230)	-	2906638..2907033 (-)	396	WP_013353310.1	hypothetical protein	-
BAMTA208_RS14725 (BAMTA208_15235)	-	2907023..2907436 (-)	414	WP_013353311.1	hypothetical protein	-
BAMTA208_RS14730 (BAMTA208_15240)	-	2907622..2907846 (+)	225	WP_014470866.1	helix-turn-helix domain-containing protein	-
BAMTA208_RS14735 (BAMTA208_15245)	-	2907969..2908271 (+)	303	WP_014470867.1	hypothetical protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44372.86 Da
• Isoelectric Point: 6.5099

>NTDB_id=35579 BAMTA208_RS14705 WP_013353308.1 2902224..2903354(-) (rapC) [Bacillus amyloliquefaciens TA208]
MSPVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYSLMKFRHQLMLDYLEPVTVRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLIHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRYEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYSKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIYQGDKLFESLQKYLEALYINAIDQMGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYIYHQKMIQTQKQIQRGECLYEF

Nucleotide

• Length: 1131 bp

>NTDB_id=35579 BAMTA208_RS14705 WP_013353308.1 2902224..2903354(-) (rapC) [Bacillus amyloliquefaciens TA208]
GTGAGTCCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAGATAAACGAGATGGAAGAAGACGAGTATTTACTAATATATTATT
CTCTCATGAAATTCCGCCATCAACTCATGCTTGATTATTTAGAGCCGGTAACTGTCAGAGTCCGACCGACAATCGACGAG
TTGCTGGAAAAAATCGAAGCATCAAATAAAGGCATTTCCGGCCTGCTGTGCTATTATTCTTTATTTTTTCGCGGCATGTA
TGAATTTGATCAGAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCATTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAAGTCCGGAAAATTCAATGTCTGTTCGTCATATCTGG
GAATTATGTTGACTTTAAACGTTATGAAAAAAGTTTGCCGCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACTTAGAAGAATACAGTAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATTTCTGAAAAGTATAAATTGGGCAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCAAAAAAGGACTTTCATCAGCTATATATCAAGGGG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATACATTAACGCAATAGACCAAATGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAGTC
AAAGCAATATGACAAATCATATATTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (193-252)

3D structure

• AlphaFold DB: A0A9P1JJI8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.591	100	0.449
rapF	Bacillus subtilis subsp. subtilis str. 168	40.633	100	0.41