Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA/cglA/cilD   Type   Machinery gene
Locus tag   E5Q10_RS09865 Genome accession   NZ_CP038808
Coordinates   1834560..1835501 (-) Length   313 a.a.
NCBI ID   WP_000249564.1    Uniprot ID   Q8DN86
Organism   Streptococcus pneumoniae strain R6CIB17     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1829560..1840501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Q10_RS09825 (E5Q10_09820) comYH 1830046..1830999 (-) 954 WP_000345135.1 class I SAM-dependent methyltransferase Machinery gene
  E5Q10_RS09830 (E5Q10_09825) - 1831060..1831654 (-) 595 Protein_1830 class I SAM-dependent methyltransferase -
  E5Q10_RS09835 (E5Q10_09830) comGG/cglG 1831791..1832204 (-) 414 WP_000265622.1 competence type IV pilus minor pilin ComGG Machinery gene
  E5Q10_RS09840 (E5Q10_09835) comGF/cglF 1832182..1832643 (-) 462 WP_000250534.1 competence type IV pilus minor pilin ComGF Machinery gene
  E5Q10_RS09845 (E5Q10_09840) comGE/cglE 1832606..1832908 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  E5Q10_RS09850 (E5Q10_09845) comGD/cglD 1832871..1833275 (-) 405 WP_000588026.1 competence type IV pilus minor pilin ComGD Machinery gene
  E5Q10_RS09855 (E5Q10_09850) comGC/cglC 1833268..1833594 (-) 327 WP_000738626.1 comG operon protein ComGC Machinery gene
  E5Q10_RS09860 (E5Q10_09855) comGB/cglB 1833596..1834612 (-) 1017 WP_074196785.1 competence type IV pilus assembly protein ComGB Machinery gene
  E5Q10_RS09865 (E5Q10_09860) comGA/cglA/cilD 1834560..1835501 (-) 942 WP_000249564.1 competence type IV pilus ATPase ComGA Machinery gene
  E5Q10_RS09870 (E5Q10_09865) - 1835577..1835942 (-) 366 WP_000286415.1 DUF1033 family protein -
  E5Q10_RS09875 (E5Q10_09870) - 1836093..1837151 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -
  E5Q10_RS09880 (E5Q10_09875) nagA 1837314..1838465 (-) 1152 WP_001134457.1 N-acetylglucosamine-6-phosphate deacetylase -
  E5Q10_RS09885 (E5Q10_09880) - 1838618..1840435 (-) 1818 WP_001220853.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35555.47 Da        Isoelectric Point: 6.1330

>NTDB_id=355623 E5Q10_RS09865 WP_000249564.1 1834560..1835501(-) (comGA/cglA/cilD) [Streptococcus pneumoniae strain R6CIB17]
MVQEIAQEIIRSARKKGTQDIYFVPKLDAYELHMRVGDERCKIGSYDFEKFAAVISHFKFVAGMNVGEKRRSQLGSCDYA
YDHKIASLRLSTVGDYRGHESLVIRLLHDEEQDLHFWFQDIEELGKQYRQRGLYLFAGPVGSGKTTLMHELSKSLFKGQQ
VMSIEDPVEIKQDDMLQLQLNEAIGLTYENLIKLSLRHRPDLLIIGEIRDSETARAVVRASLTGATVFSTIHAKSIRGVY
ERLLELGVSEEELAVVLQGVCYQRLIGGGGIVDFASRDYQEHQAAKWNEQIDQLLKDGHITSLQAETEKISYS

Nucleotide


Download         Length: 942 bp        

>NTDB_id=355623 E5Q10_RS09865 WP_000249564.1 1834560..1835501(-) (comGA/cglA/cilD) [Streptococcus pneumoniae strain R6CIB17]
ATGGTTCAAGAAATTGCACAAGAAATCATTCGTTCAGCTCGGAAAAAAGGGACGCAGGATATCTATTTTGTCCCTAAGTT
AGACGCCTATGAGCTTCATATGAGGGTAGGAGACGAGCGCTGTAAAATTGGTAGCTATGATTTTGAAAAGTTTGCAGCCG
TTATCAGTCACTTTAAGTTTGTGGCGGGTATGAATGTGGGAGAAAAAAGACGTAGTCAACTGGGTTCCTGTGATTATGCC
TATGACCATAAGATAGCGTCTCTACGTTTATCTACTGTAGGCGATTATCGGGGGCATGAGAGTTTGGTTATCCGTTTGTT
GCACGATGAGGAGCAGGACCTGCATTTTTGGTTTCAGGATATTGAAGAATTAGGCAAGCAGTACAGGCAACGGGGACTCT
ATCTTTTTGCTGGTCCGGTTGGGAGTGGTAAGACGACCTTGATGCATGAATTGTCCAAGTCACTCTTTAAAGGACAGCAA
GTTATGTCCATCGAAGATCCTGTCGAAATCAAGCAGGACGACATGCTTCAGTTGCAGTTGAACGAAGCAATCGGCCTAAC
CTATGAAAATCTAATCAAACTTTCCTTGCGTCATCGACCAGATCTCTTGATTATCGGAGAAATTCGTGACAGCGAGACGG
CGCGTGCAGTGGTCAGAGCTAGTTTGACAGGTGCGACAGTCTTTTCAACCATTCACGCCAAGAGTATCCGAGGTGTTTAT
GAGCGTCTGCTGGAGTTGGGTGTGAGTGAAGAAGAATTGGCAGTTGTTCTGCAAGGAGTCTGCTACCAGAGATTAATCGG
GGGAGGAGGAATCGTTGACTTTGCAAGCAGAGATTATCAAGAACACCAAGCAGCCAAGTGGAATGAGCAAATTGACCAGC
TTCTTAAAGATGGACATATCACAAGTCTTCAGGCTGAGACGGAAAAAATTAGCTACAGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DN86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

100

100

1
  comGA/cglA/cilD Streptococcus pneumoniae D39

100

100

1
  comGA/cglA/cilD Streptococcus pneumoniae R6

100

100

1
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

100

100

1
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

95.847

100

0.958
  comYA Streptococcus gordonii str. Challis substr. CH1

78.065

99.042

0.773
  comYA Streptococcus mutans UA159

65.916

99.361

0.655
  comYA Streptococcus mutans UA140

65.916

99.361

0.655
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

62.581

99.042

0.62
  comGA Lactococcus lactis subsp. cremoris KW2

54.808

99.681

0.546
  comGA Latilactobacillus sakei subsp. sakei 23K

41.912

86.901

0.364

Multiple sequence alignment