Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   BAMTA208_RS09330 Genome accession   NC_017188
Coordinates   1906887..1907909 (-) Length   340 a.a.
NCBI ID   WP_013352157.1    Uniprot ID   A0A9P1JGM5
Organism   Bacillus amyloliquefaciens TA208     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1901887..1912909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS09305 (BAMTA208_09595) - 1902393..1903274 (-) 882 WP_014472569.1 2-dehydropantoate 2-reductase -
  BAMTA208_RS09310 (BAMTA208_09600) - 1903437..1903919 (+) 483 WP_013352161.1 N-acetyltransferase -
  BAMTA208_RS09315 (BAMTA208_09605) gerR 1903960..1904535 (-) 576 WP_013352160.1 sporulation-specific transcriptional regulator GerR -
  BAMTA208_RS20215 (BAMTA208_09610) rpmF 1904692..1904871 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  BAMTA208_RS09320 (BAMTA208_09615) - 1904893..1905411 (-) 519 WP_013352159.1 YceD family protein -
  BAMTA208_RS09325 (BAMTA208_09620) - 1905619..1906866 (+) 1248 WP_013352158.1 nucleotidyltransferase -
  BAMTA208_RS09330 (BAMTA208_09625) sepM 1906887..1907909 (-) 1023 WP_013352157.1 SepM family pheromone-processing serine protease Regulator
  BAMTA208_RS09335 (BAMTA208_09630) - 1907915..1908694 (-) 780 WP_013352156.1 patatin-like phospholipase family protein -
  BAMTA208_RS09340 (BAMTA208_09635) ylbJ 1908872..1910098 (+) 1227 WP_014472570.1 sporulation integral membrane protein YlbJ -
  BAMTA208_RS09345 (BAMTA208_09640) coaD 1910116..1910598 (-) 483 WP_013352154.1 pantetheine-phosphate adenylyltransferase -
  BAMTA208_RS09350 (BAMTA208_09645) rsmD 1910603..1911157 (-) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BAMTA208_RS09355 (BAMTA208_09655) - 1911456..1911728 (-) 273 WP_013352153.1 YlbG family protein -
  BAMTA208_RS09360 (BAMTA208_09660) ylbF 1911787..1912236 (-) 450 WP_013352152.1 YlbF family regulator Regulator
  BAMTA208_RS09365 (BAMTA208_09665) - 1912308..1912547 (-) 240 WP_003154475.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37480.23 Da        Isoelectric Point: 9.5435

>NTDB_id=35527 BAMTA208_RS09330 WP_013352157.1 1906887..1907909(-) (sepM) [Bacillus amyloliquefaciens TA208]
MKAKHFRWVFIILILLIAITFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYDEIV
PDESIKEEGETDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIYASSVVSNMPAKGKIKVGDKIISADGKKYES
AEKLIDYISSKKAGEKVTFNIERDTKEKTVTLKLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDKLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=35527 BAMTA208_RS09330 WP_013352157.1 1906887..1907909(-) (sepM) [Bacillus amyloliquefaciens TA208]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATCGCTATTACATTTATTAAGCTTCCGTATTA
CATTACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTACCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAGGTGCATCCTTACGATGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAAACTGATTCAGACTATATGAAGCGCCAACTGCAGATGATGAAAAGCTCTCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGCAAACAGGTAAAATACTCATTTAACGGCATTTACGCCAGCTCAG
TCGTCTCCAATATGCCGGCAAAAGGAAAAATAAAGGTCGGTGATAAAATCATCAGCGCGGACGGGAAAAAATATGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGAAAAAGTAACGTTTAACATTGAACGTGACACGAAAGA
AAAGACAGTTACCCTTAAGCTGAAATCATTCCCGGACGATCCGAAAAGAGCCGGAATCGGCGTAGCATTATATACGGACC
GGAACGTGAAAGTGAAGCCGGATCTTCATTTCAGTATTGAAAACATCGGCGGGCCTTCTGCCGGTCTCATGATGTCTTTG
GAAATTTACAATCAGCTGACAAAACCTGACGAAACAAAAGGCTACAATATAGCCGGAACGGGAACAATCGACGTTGACGG
CAAGGTCGGACCGATTGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ACCAAAACGGAGCTGAAAACTCTGATTATAAAAATGCAGTAAAAACGGCGAAAGCGATTAAGTCCGATATGAAAATCGTT
CCTGTCGATACGATGCAGGACGCACTTGATTATTTGGATAAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-330)

PDZ domain (PDZ_2)

(127-194)

Peptidase family M50 (Peptidase_M50)

(109-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JGM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.728

100

0.394

Multiple sequence alignment