Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SaO268_RS08200 Genome accession   NZ_CP038612
Coordinates   1615183..1615629 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O268     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1610183..1620629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO268_RS08170 (SaO268_1506) gcvPA 1611110..1612456 (-) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SaO268_RS08175 (SaO268_1507) gcvT 1612476..1613567 (-) 1092 WP_000093343.1 glycine cleavage system aminomethyltransferase GcvT -
  SaO268_RS08180 (SaO268_1508) - 1613725..1614249 (-) 525 WP_001015120.1 shikimate kinase -
  SaO268_RS08185 - 1614239..1614385 (-) 147 WP_001789879.1 hypothetical protein -
  SaO268_RS08190 (SaO268_1509) comGF 1614482..1614979 (-) 498 WP_078061106.1 competence type IV pilus minor pilin ComGF Machinery gene
  SaO268_RS08195 (SaO268_1510) comGE 1614897..1615196 (-) 300 WP_000844409.1 hypothetical protein Machinery gene
  SaO268_RS08200 (SaO268_1511) comGD 1615183..1615629 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  SaO268_RS08205 (SaO268_1512) comGC 1615607..1615918 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SaO268_RS08210 (SaO268_1513) comGB 1615932..1617002 (-) 1071 WP_000776418.1 competence type IV pilus assembly protein ComGB Machinery gene
  SaO268_RS08215 (SaO268_1514) comGA 1616974..1617948 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  SaO268_RS08220 (SaO268_1515) - 1618000..1618623 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SaO268_RS08225 (SaO268_1516) - 1618620..1618949 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SaO268_RS08230 (SaO268_1517) - 1618949..1619935 (-) 987 WP_135830986.1 ROK family glucokinase -
  SaO268_RS08235 - 1619932..1620135 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=355186 SaO268_RS08200 WP_001796473.1 1615183..1615629(-) (comGD) [Staphylococcus aureus strain O268]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=355186 SaO268_RS08200 WP_001796473.1 1615183..1615629(-) (comGD) [Staphylococcus aureus strain O268]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment