Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   E1742_RS21265 Genome accession   NZ_CP038026
Coordinates   4788485..4789714 (-) Length   409 a.a.
NCBI ID   WP_134387124.1    Uniprot ID   -
Organism   Pseudoduganella plicata strain DSM 17505     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4783485..4794714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1742_RS21235 (E1742_21235) - 4784342..4785028 (+) 687 WP_134387118.1 autoinducer binding domain-containing protein -
  E1742_RS21240 (E1742_21240) - 4785046..4785729 (+) 684 WP_134387119.1 4'-phosphopantetheinyl transferase -
  E1742_RS21245 (E1742_21245) yacG 4785757..4785933 (-) 177 WP_134387120.1 DNA gyrase inhibitor YacG -
  E1742_RS21250 (E1742_21250) zapD 4785946..4786701 (-) 756 WP_134387121.1 cell division protein ZapD -
  E1742_RS21255 (E1742_21255) coaE 4786900..4787526 (-) 627 WP_134387122.1 dephospho-CoA kinase -
  E1742_RS21260 (E1742_21260) pilD 4787526..4788401 (-) 876 WP_134387123.1 A24 family peptidase Machinery gene
  E1742_RS21265 (E1742_21265) pilC 4788485..4789714 (-) 1230 WP_134387124.1 type II secretion system F family protein Machinery gene
  E1742_RS21270 (E1742_21270) pilB 4789722..4791446 (-) 1725 WP_134387125.1 type IV-A pilus assembly ATPase PilB Machinery gene
  E1742_RS21275 (E1742_21275) - 4791556..4792827 (-) 1272 WP_134387126.1 HlyC/CorC family transporter -
  E1742_RS21280 (E1742_21280) - 4792997..4794226 (+) 1230 WP_134387127.1 glutamate carboxypeptidase -
  E1742_RS21285 (E1742_21285) uraH 4794211..4794564 (-) 354 WP_134387128.1 hydroxyisourate hydrolase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44807.91 Da        Isoelectric Point: 9.8735

>NTDB_id=351542 E1742_RS21265 WP_134387124.1 4788485..4789714(-) (pilC) [Pseudoduganella plicata strain DSM 17505]
MRTSAMASTGNQVKESVFAWEGKDKTGKTVRGELRAGGVAVVNVTLRRQGIMVTKVKKKVYRSGRKVTDKDITLFTRQLA
TMMKAGVPLLQSFDIVGKGHANPSVSKLIMDLRADIETGTSLNQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAIY
KEKTLAMKAKIKSALTYPIAILAVAFIVTAVIMIWVVPAFKEVFTSFGADLPAPTLFVMAMSEFFVNNWYIMLLVVFWSV
YFFFESWKRSIRMQQAMDRLLLRVPVFGDVIRKATVARWTRTLSTMFAAGVPLVEALDSVGGAAGNAVYLEATRKIQNEV
STGTSLTVAMQNVEVFPNMVTQMVSIGEESGALDAMLGKVADFYEDEVDEAVASLAALMEPAIMVILGVLIGGLVVAMYL
PIFKLGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=351542 E1742_RS21265 WP_134387124.1 4788485..4789714(-) (pilC) [Pseudoduganella plicata strain DSM 17505]
ATGAGGACAAGCGCGATGGCATCCACGGGCAACCAGGTCAAGGAATCCGTCTTCGCCTGGGAAGGCAAGGACAAAACGGG
CAAGACGGTGCGCGGGGAGCTGCGCGCCGGCGGCGTCGCCGTGGTGAACGTGACACTGCGGCGCCAGGGCATCATGGTCA
CGAAAGTGAAGAAGAAGGTGTACCGGTCCGGGCGAAAGGTCACGGACAAGGACATCACGCTGTTCACGCGCCAGCTGGCC
ACGATGATGAAGGCCGGCGTGCCGCTGCTGCAGTCGTTCGATATCGTCGGCAAGGGCCACGCCAATCCGTCCGTGTCGAA
ACTGATCATGGACCTGCGCGCGGACATCGAGACGGGCACGAGCCTGAACCAGGCGTTCCGCAAGTTCCCCCTGTATTTCG
ATCCGCTGTTTTGCAACCTGGTCGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTGACGCGGCTGGCGATATAC
AAGGAAAAGACGCTGGCGATGAAGGCCAAGATCAAGTCGGCGCTGACGTATCCCATCGCCATCCTGGCCGTGGCGTTCAT
CGTCACGGCCGTCATCATGATCTGGGTGGTTCCGGCGTTCAAGGAAGTCTTCACCAGCTTCGGTGCCGACCTGCCCGCGC
CCACGCTGTTCGTGATGGCGATGTCGGAATTTTTCGTCAACAACTGGTACATCATGCTGCTCGTCGTGTTCTGGTCCGTC
TACTTTTTCTTCGAGTCGTGGAAACGCTCGATCAGGATGCAGCAGGCGATGGACCGGCTGCTGCTGCGCGTGCCCGTATT
CGGCGACGTGATCCGCAAGGCCACCGTGGCGCGCTGGACCCGCACGCTGTCGACGATGTTCGCGGCCGGCGTCCCGCTGG
TCGAGGCGCTCGACTCCGTCGGCGGCGCGGCCGGCAATGCCGTCTACCTGGAGGCCACGCGCAAGATCCAGAACGAAGTC
TCCACGGGCACGAGCCTGACGGTGGCGATGCAGAACGTGGAGGTGTTCCCGAACATGGTCACGCAGATGGTGTCGATCGG
CGAGGAATCGGGCGCGCTCGATGCCATGCTGGGCAAGGTGGCCGATTTCTACGAGGACGAAGTGGACGAGGCGGTCGCCT
CGCTGGCGGCGCTGATGGAGCCGGCGATCATGGTCATTCTCGGCGTCCTGATCGGCGGGTTGGTCGTGGCGATGTATCTG
CCTATCTTCAAGTTGGGTTCGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56

97.8

0.548
  pilC Legionella pneumophila strain ERS1305867

53.535

96.822

0.518
  pilG Neisseria gonorrhoeae MS11

53.149

97.066

0.516
  pilC Acinetobacter baylyi ADP1

51.589

100

0.516
  pilG Neisseria meningitidis 44/76-A

52.897

97.066

0.513
  pilC Acinetobacter baumannii D1279779

51.385

97.066

0.499
  pilC Vibrio campbellii strain DS40M4

39.173

100

0.394
  pilC Vibrio cholerae strain A1552

39.043

97.066

0.379
  pilC Thermus thermophilus HB27

38.095

97.555

0.372

Multiple sequence alignment