Detailed information NTG0351541

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: E1742_RS21260
• Genome accession: NZ_CP038026
• Coordinates: 4787526..4788401 (-)
• Length: 291 a.a.
• NCBI ID: WP_134387123.1
• Uniprot ID: A0A4P7BJI4
• Organism: Pseudoduganella plicata strain DSM 17505
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4782526..4793401

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E1742_RS21230 (E1742_21230)	-	4783003..4784154 (+)	1152	WP_166793531.1	acyl-CoA dehydrogenase family protein	-
E1742_RS21235 (E1742_21235)	-	4784342..4785028 (+)	687	WP_134387118.1	autoinducer binding domain-containing protein	-
E1742_RS21240 (E1742_21240)	-	4785046..4785729 (+)	684	WP_134387119.1	4'-phosphopantetheinyl transferase	-
E1742_RS21245 (E1742_21245)	yacG	4785757..4785933 (-)	177	WP_134387120.1	DNA gyrase inhibitor YacG	-
E1742_RS21250 (E1742_21250)	zapD	4785946..4786701 (-)	756	WP_134387121.1	cell division protein ZapD	-
E1742_RS21255 (E1742_21255)	coaE	4786900..4787526 (-)	627	WP_134387122.1	dephospho-CoA kinase	-
E1742_RS21260 (E1742_21260)	pilD	4787526..4788401 (-)	876	WP_134387123.1	A24 family peptidase	Machinery gene
E1742_RS21265 (E1742_21265)	pilC	4788485..4789714 (-)	1230	WP_134387124.1	type II secretion system F family protein	Machinery gene
E1742_RS21270 (E1742_21270)	pilB	4789722..4791446 (-)	1725	WP_134387125.1	type IV-A pilus assembly ATPase PilB	Machinery gene
E1742_RS21275 (E1742_21275)	-	4791556..4792827 (-)	1272	WP_134387126.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 30854.67 Da
• Isoelectric Point: 7.6560

>NTDB_id=351541 E1742_RS21260 WP_134387123.1 4787526..4788401(-) (pilD) [Pseudoduganella plicata strain DSM 17505]
MLQDLYLFAPPATAGAAILAGIFGLLIGSFLNVVIYRIPEMMRRESANYVAAESGQPLPYTERFDLVLPRSACPHCGHKI
TALENVPVISWLALRGKCSQCKARISARYPVIEALTGLLSALLIWQFGSGVMGLATLLFAYLLIAMTFIDADTQLLPDDL
TYPLLWAGLLVNINGTFVPLADAVIGAAAGYLVLWTVYWLFKLATGKEGMGYGDFKLLAALGAWLGWTMLPTIILLSSVV
GALVGIGLIVFAGRGRGNPIPFGPYLAAAGMIALLFGGQIAGFTTGLLGGA

Nucleotide

• Length: 876 bp

>NTDB_id=351541 E1742_RS21260 WP_134387123.1 4787526..4788401(-) (pilD) [Pseudoduganella plicata strain DSM 17505]
ATGCTCCAGGACCTCTACCTGTTCGCCCCACCCGCCACCGCTGGCGCCGCCATCCTCGCCGGCATCTTCGGCCTGTTGAT
CGGCAGCTTCCTGAACGTCGTCATCTACCGCATTCCGGAGATGATGCGGCGCGAGTCCGCCAATTACGTGGCCGCCGAAT
CGGGCCAGCCGCTGCCTTACACAGAGCGCTTCGACCTGGTGCTGCCCCGCTCCGCGTGCCCGCATTGCGGCCACAAGATC
ACGGCGCTGGAAAACGTGCCCGTCATCAGCTGGCTGGCGTTGCGGGGCAAGTGCAGCCAGTGCAAGGCGCGCATCTCGGC
GCGCTATCCCGTCATCGAAGCGTTGACCGGCCTGTTGTCCGCGCTGCTGATCTGGCAGTTCGGCAGCGGCGTGATGGGCC
TGGCCACCTTGCTGTTCGCGTACCTGCTGATCGCGATGACGTTCATCGACGCCGACACGCAGCTGCTGCCGGACGACCTG
ACCTACCCGCTGCTGTGGGCCGGCCTGCTGGTCAACATCAATGGCACTTTCGTGCCGCTGGCCGATGCCGTCATCGGCGC
GGCGGCAGGCTATCTGGTGCTGTGGACCGTCTACTGGCTGTTCAAGCTTGCCACCGGCAAGGAAGGCATGGGCTACGGCG
ACTTCAAGCTGCTGGCCGCGCTGGGCGCATGGCTGGGCTGGACGATGCTGCCGACGATTATCCTGCTGTCGTCCGTCGTC
GGCGCCCTCGTCGGCATCGGCCTGATCGTCTTTGCTGGTCGGGGACGCGGCAATCCCATTCCGTTCGGCCCTTACCTGGC
CGCGGCCGGCATGATTGCGCTGCTGTTCGGCGGCCAGATCGCCGGTTTCACGACCGGCCTGCTGGGCGGCGCGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

3D structure

• AlphaFold DB: A0A4P7BJI4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.509	93.814	0.54
pilD	Vibrio campbellii strain DS40M4	54.122	95.876	0.519
pilD	Acinetobacter baumannii D1279779	47.735	98.625	0.471
pilD	Acinetobacter nosocomialis M2	47.038	98.625	0.464
pilD	Neisseria gonorrhoeae MS11	48.718	93.814	0.457