Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E1B22_RS03565 Genome accession   NZ_CP037895
Coordinates   835689..836108 (-) Length   139 a.a.
NCBI ID   WP_135224590.1    Uniprot ID   -
Organism   Thermaerobacter sp. FW80     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 830689..841108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1B22_RS03540 (E1B22_03540) - 831649..832944 (-) 1296 WP_135224585.1 adenylosuccinate synthase -
  E1B22_RS03545 (E1B22_03545) dnaB 833021..834352 (-) 1332 WP_135224586.1 replicative DNA helicase -
  E1B22_RS03550 (E1B22_03550) rplI 834357..834806 (-) 450 WP_135224587.1 50S ribosomal protein L9 -
  E1B22_RS03555 (E1B22_03555) - 834835..835167 (-) 333 WP_135224588.1 MazG-like family protein -
  E1B22_RS03560 (E1B22_03560) rpsR 835439..835666 (-) 228 WP_135224589.1 30S ribosomal protein S18 -
  E1B22_RS03565 (E1B22_03565) ssb 835689..836108 (-) 420 WP_135224590.1 single-stranded DNA-binding protein Machinery gene
  E1B22_RS03570 (E1B22_03570) rpsF 836213..836506 (-) 294 WP_135224591.1 30S ribosomal protein S6 -
  E1B22_RS03575 (E1B22_03575) - 836739..836987 (-) 249 WP_135224592.1 DUF951 domain-containing protein -
  E1B22_RS03580 (E1B22_03580) - 836992..837771 (-) 780 WP_135224593.1 CvpA family protein -
  E1B22_RS03585 (E1B22_03585) - 837822..838532 (-) 711 WP_135224594.1 ABC transporter ATP-binding protein -
  E1B22_RS03590 (E1B22_03590) - 838532..839362 (-) 831 WP_371413484.1 ABC transporter ATP-binding protein -
  E1B22_RS03595 (E1B22_03595) - 839362..840450 (-) 1089 WP_135224595.1 branched-chain amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15312.17 Da        Isoelectric Point: 4.6616

>NTDB_id=350535 E1B22_RS03565 WP_135224590.1 835689..836108(-) (ssb) [Thermaerobacter sp. FW80]
MLNVVVLIGRLVRDPELRYTPSGVAVGGFTLAVDRPFTNQQGEREADFIDVVVWRKLAETCANHLSKGRLVAVRGRLQVR
SYETQDGQRRRVAEVVADDVRFLDRAPGADRGTTADTQAGEELADFGDVTGLPDDDIPF

Nucleotide


Download         Length: 420 bp        

>NTDB_id=350535 E1B22_RS03565 WP_135224590.1 835689..836108(-) (ssb) [Thermaerobacter sp. FW80]
GTGTTGAACGTGGTCGTGTTGATCGGCCGGCTGGTGCGCGATCCGGAGCTGCGCTACACGCCCAGCGGCGTGGCCGTCGG
CGGCTTCACCCTGGCCGTGGATCGCCCCTTCACCAACCAGCAGGGTGAGCGGGAGGCCGACTTCATCGACGTCGTCGTCT
GGCGGAAGCTGGCGGAGACGTGCGCCAACCACCTCAGCAAGGGGCGGCTGGTGGCGGTGCGGGGCCGCCTCCAGGTGCGC
TCCTATGAGACCCAAGACGGGCAGCGCCGCCGCGTCGCGGAGGTGGTGGCCGACGACGTCCGGTTCCTGGACCGGGCGCC
CGGGGCCGACCGCGGGACGACAGCCGACACCCAGGCGGGGGAAGAGCTGGCCGACTTCGGGGACGTGACCGGCTTGCCCG
ACGACGACATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

42.941

100

0.525
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.385

74.82

0.489
  ssbB/cilA Streptococcus mitis SK321

42.143

100

0.424
  ssbA Streptococcus mutans UA159

41.429

100

0.417
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.429

100

0.417
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.429

100

0.417
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.271

76.978

0.41
  ssbB/cilA Streptococcus pneumoniae Rx1

40.714

100

0.41
  ssbB/cilA Streptococcus pneumoniae D39

40.714

100

0.41
  ssbB/cilA Streptococcus pneumoniae R6

40.714

100

0.41
  ssbB/cilA Streptococcus mitis NCTC 12261

40.714

100

0.41

Multiple sequence alignment