Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EZ304_RS06745 Genome accession   NZ_CP037858
Coordinates   1475886..1477145 (+) Length   419 a.a.
NCBI ID   WP_142808074.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain X28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1470886..1482145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZ304_RS06725 pilR 1471054..1472427 (+) 1374 WP_142806623.1 sigma-54 dependent transcriptional regulator Regulator
  EZ304_RS06730 pilB 1472580..1474313 (-) 1734 WP_142806624.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EZ304_RS06735 - 1474536..1474943 (-) 408 WP_142806625.1 pilin -
  EZ304_RS06740 - 1475096..1475533 (-) 438 WP_142806626.1 pilin -
  EZ304_RS06745 pilC 1475886..1477145 (+) 1260 WP_142808074.1 type II secretion system F family protein Machinery gene
  EZ304_RS06750 - 1477153..1478016 (+) 864 WP_049429911.1 A24 family peptidase -
  EZ304_RS06755 coaE 1478028..1478639 (+) 612 WP_142806627.1 dephospho-CoA kinase -
  EZ304_RS06760 - 1478737..1480104 (-) 1368 WP_099553741.1 HAMP domain-containing sensor histidine kinase -
  EZ304_RS06765 - 1480067..1480744 (-) 678 WP_005410804.1 response regulator transcription factor -
  EZ304_RS06770 - 1480753..1481223 (-) 471 WP_099553743.1 hypothetical protein -
  EZ304_RS06775 - 1481313..1481789 (-) 477 WP_142806628.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45937.44 Da        Isoelectric Point: 10.2521

>NTDB_id=350233 EZ304_RS06745 WP_142808074.1 1475886..1477145(+) (pilC) [Stenotrophomonas maltophilia strain X28]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKSKPLFGAAGSPIKPKD
IAFFSRQMATMMKSGVPIVSSLDIIASGHKNPRMKKLVDTIRTDIEGGSSMHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFKDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
MLLVAIGTAVALVMSYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=350233 EZ304_RS06745 WP_142808074.1 1475886..1477145(+) (pilC) [Stenotrophomonas maltophilia strain X28]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGTGCCACCATGGAACTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGTCGAAGCCGCTGTTCGGCGCCGCCGGCAGCCCGATCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTATCGTCGTTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTGGACACCATCCGCACCGACATCGAGGGCGGCTCTTCGATGCATGAAG
CCATCAGCAAGCACCCGGTGCAGTTCGATGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAAAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTGGCGATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCAAGGACGTGTTCA
AGAGCTTCGGCGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAACCTCTCGAGATTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTGGTCGCGATCGGTACGGCAGTCGCTCTGGTCATGTCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGCGCCACCGGCAATACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTCTCGGTGGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGCGCGCTGGATGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

94.511

0.525
  pilC Acinetobacter baylyi ADP1

51.106

97.136

0.496
  pilC Legionella pneumophila strain ERS1305867

51.629

95.227

0.492
  pilC Acinetobacter baumannii D1279779

50.126

94.749

0.475
  pilG Neisseria gonorrhoeae MS11

45.137

95.704

0.432
  pilG Neisseria meningitidis 44/76-A

44.888

95.704

0.43
  pilC Vibrio cholerae strain A1552

41.133

96.897

0.399
  pilC Vibrio campbellii strain DS40M4

40.898

95.704

0.391
  pilC Thermus thermophilus HB27

37.562

95.943

0.36

Multiple sequence alignment