Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GK046_RS03980 Genome accession   NZ_CP046259
Coordinates   802626..804053 (+) Length   475 a.a.
NCBI ID   WP_024234388.1    Uniprot ID   -
Organism   Escherichia coli strain ECO2947     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 797626..809053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GK046_RS03950 (GK046_03950) cobU 797898..798443 (-) 546 WP_000973170.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  GK046_RS03955 (GK046_03955) - 798667..798801 (+) 135 WP_000435255.1 EutP/PduV family microcompartment system protein -
  GK046_RS03960 (GK046_03960) tmaR 798902..799231 (-) 330 WP_000450409.1 DUF496 family protein -
  GK046_RS03965 (GK046_03965) yeeA 799403..800461 (-) 1059 WP_001200891.1 FUSC family protein -
  GK046_RS03970 (GK046_03970) sbmC 800659..801132 (-) 474 WP_024234387.1 DNA gyrase inhibitor SbmC -
  GK046_RS03975 (GK046_03975) dacD 801251..802417 (-) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GK046_RS03980 (GK046_03980) sbcB 802626..804053 (+) 1428 WP_024234388.1 exodeoxyribonuclease I Machinery gene
  GK046_RS03985 (GK046_03985) tsuB 804096..804323 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GK046_RS03990 (GK046_03990) tsuA 804337..805395 (-) 1059 WP_000492310.1 thiosulfate utilization transporter TsuA/YeeE -
  GK046_RS03995 (GK046_03995) plaP 805574..806932 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GK046_RS04000 (GK046_04000) yoeI 806922..806984 (-) 63 WP_010723108.1 membrane protein YoeI -
  GK046_RS04005 (GK046_04005) yeeY 807199..808128 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  GK046_RS04010 (GK046_04010) yeeZ 808174..808998 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54441.71 Da        Isoelectric Point: 5.5790

>NTDB_id=350232 GK046_RS03980 WP_024234388.1 802626..804053(+) (sbcB) [Escherichia coli strain ECO2947]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRHQVFTPEFLQGYADELQMLVQQHADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=350232 GK046_RS03980 WP_024234388.1 802626..804053(+) (sbcB) [Escherichia coli strain ECO2947]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGCTGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCACCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAC
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585

Multiple sequence alignment