Detailed information NTG0350231

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: EZ304_RS06725
• Genome accession: NZ_CP037858
• Coordinates: 1471054..1472427 (+)
• Length: 457 a.a.
• NCBI ID: WP_142806623.1
• Uniprot ID: -
• Organism: Stenotrophomonas maltophilia strain X28
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1466054..1477427

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EZ304_RS06710	sucD	1466956..1467831 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
EZ304_RS06715	sucC	1467853..1469022 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
EZ304_RS06720	-	1469380..1470993 (+)	1614	WP_099553729.1	ATP-binding protein	-
EZ304_RS06725	pilR	1471054..1472427 (+)	1374	WP_142806623.1	sigma-54 dependent transcriptional regulator	Regulator
EZ304_RS06730	pilB	1472580..1474313 (-)	1734	WP_142806624.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EZ304_RS06735	-	1474536..1474943 (-)	408	WP_142806625.1	pilin	-
EZ304_RS06740	-	1475096..1475533 (-)	438	WP_142806626.1	pilin	-
EZ304_RS06745	pilC	1475886..1477145 (+)	1260	WP_142808074.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49545.79 Da
• Isoelectric Point: 6.4407

>NTDB_id=350231 EZ304_RS06725 WP_142806623.1 1471054..1472427(+) (pilR) [Stenotrophomonas maltophilia strain X28]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPSPNAEQGGRLLGHSQAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=350231 EZ304_RS06725 WP_142806623.1 1471054..1472427(+) (pilR) [Stenotrophomonas maltophilia strain X28]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAGGCACGTGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCGGATGGCAACGGTATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTCGCA
ATGATCACCGCATTCGGCAGCATGGATCTCGCCGTGGAGGCGCTGAAGGCCGGCGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACGCCGAGCGCCCGGCACCGAGCCCCAACG
CCGAACAGGGCGGGCGCCTGCTTGGCCACTCACAGGCCATGGATGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAGTCGGGCGTTGGCAAGGAGCTGGTCGCACGCACCATCCATGCCCAGGGCGCGCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCATCGCA
AGGGCAGTTTCAGCGGCGCGCACGCCGACAAGCCCGGCCTGTTCCAGGCTGCGCATGGCGGCACCCTGTTCCTGGACGAA
GTGGCTGAACTGCCACTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAAGAAAAGTCGGTGCGCGCGGTGGGCGCGGC
CAACGAGGAGCCGGTGGATGTCCGCATTCTCTCGGCCACCCACAAGGATCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCGCTGCGCGAGCGCCGTCAGGACCTGCCTGAA
CTGGCCGCGGCCGTGCTGGCCCGATTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCGTCGGCGCTGGAAGC
ACTGGCGCAGTATGCGTTCCCGGGCAATGTGCGCGAGCTGGAAAACATCCTGGAGCGTGCTTTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGATGACCTGCGCCTGCCGCAGCACGCGCCGCGTGCACCCGGCAGTGCCGCGCCCGCCGAAGCGGTG
GCCGACCTGCAGCCGGGCAGCGCTGCCCTGCCTTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.656	99.344	0.632
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49
luxO	Vibrio cholerae strain A1552	37.079	97.374	0.361