Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   E0Z06_RS02635 Genome accession   NZ_CP037745
Coordinates   550067..551296 (-) Length   409 a.a.
NCBI ID   WP_132581632.1    Uniprot ID   A0A4P6VPB7
Organism   Rheinheimera sp. D18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 545067..556296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0Z06_RS02610 (E0Z06_02610) mutT 547105..547518 (+) 414 WP_132581622.1 8-oxo-dGTP diphosphatase MutT -
  E0Z06_RS02615 (E0Z06_02615) yacG 547515..547742 (-) 228 WP_132581624.1 DNA gyrase inhibitor YacG -
  E0Z06_RS02620 (E0Z06_02620) zapD 547772..548518 (-) 747 WP_132581626.1 cell division protein ZapD -
  E0Z06_RS02625 (E0Z06_02625) coaE 548564..549172 (-) 609 WP_132581628.1 dephospho-CoA kinase -
  E0Z06_RS02630 (E0Z06_02630) pilD 549189..550067 (-) 879 WP_132581630.1 A24 family peptidase Machinery gene
  E0Z06_RS02635 (E0Z06_02635) pilC 550067..551296 (-) 1230 WP_132581632.1 type II secretion system F family protein Machinery gene
  E0Z06_RS02640 (E0Z06_02640) pilB 551377..553068 (-) 1692 WP_132581634.1 type IV-A pilus assembly ATPase PilB Machinery gene
  E0Z06_RS02645 (E0Z06_02645) nadS 553489..553776 (-) 288 WP_132581636.1 NadS family protein -
  E0Z06_RS02650 (E0Z06_02650) - 553778..554131 (-) 354 WP_243695547.1 type II toxin-antitoxin system RelE/ParE family toxin -
  E0Z06_RS02655 (E0Z06_02655) - 554401..554850 (-) 450 WP_347812433.1 pilin -
  E0Z06_RS02660 (E0Z06_02660) - 554853..555278 (-) 426 WP_279432805.1 pilin -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44553.43 Da        Isoelectric Point: 8.9771

>NTDB_id=349834 E0Z06_RS02635 WP_132581632.1 550067..551296(-) (pilC) [Rheinheimera sp. D18]
MAQAQQLKIKELEVFKYKGVNRRGSKVDGEIKGTSIAEAKALLRQQGITPSGVKRKPKSLFGDGKKITALDIAIFTRQLA
TMLGAGVPLVQSIDLIANGADNKSLRTLMQKISVKVQAGLPLSETLREHPKYFDDLYCDLVKSGEASGSLDQIFDRLAIY
KEKAEALKSKIKKAMFYPIAVLVVSAIVTSILLIFVVPQFAEIFAGFGAELPAFTLFVLGISEFMQEYWWLVLAAIFAFG
YIVKKTYANNLTFRTWADGRIIKLPVIGSILNKAAVARYARTLSTTFAAGVPLIEALESAAGAAGNEVYKNAILFIREEV
SVGNQMHLAMKQTDQFPEMVVQMVSIGEESGALDSMLAKVANIYEQEVDDAVDGLTALLEPLIMAVLGVLIGGLIIAMYL
PIFQMGSII

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=349834 E0Z06_RS02635 WP_132581632.1 550067..551296(-) (pilC) [Rheinheimera sp. D18]
ATGGCTCAGGCACAACAACTTAAAATAAAAGAGCTGGAAGTATTTAAATATAAAGGTGTAAACCGCCGCGGCAGCAAAGT
TGATGGTGAAATAAAAGGCACTAGCATAGCGGAAGCTAAGGCATTGCTGCGCCAGCAAGGTATTACGCCATCGGGCGTAA
AGCGCAAACCTAAATCACTGTTTGGCGACGGTAAAAAAATTACCGCTTTAGATATCGCAATTTTTACTCGGCAGTTAGCC
ACCATGCTAGGTGCTGGGGTGCCATTAGTGCAGTCGATAGATCTTATTGCTAATGGCGCAGATAATAAAAGTTTACGTAC
CTTAATGCAGAAAATCTCGGTAAAAGTGCAAGCCGGTTTACCATTATCAGAAACATTGCGCGAACACCCTAAGTATTTTG
ATGATTTATATTGCGACCTAGTAAAGTCGGGCGAAGCATCAGGCTCGTTAGACCAAATTTTTGACCGACTGGCTATTTAT
AAAGAAAAAGCCGAAGCACTTAAATCGAAAATTAAAAAAGCTATGTTTTACCCTATTGCGGTACTCGTAGTATCGGCCAT
AGTCACCTCTATTTTGCTTATTTTTGTCGTGCCGCAATTTGCCGAAATTTTTGCTGGTTTTGGCGCAGAACTGCCTGCCT
TTACTTTATTTGTGTTGGGCATATCAGAGTTTATGCAAGAGTATTGGTGGCTAGTATTAGCTGCAATATTTGCTTTTGGT
TATATCGTAAAAAAAACTTACGCTAATAATTTAACGTTTAGAACTTGGGCAGATGGCCGCATTATTAAACTACCGGTTAT
TGGTAGTATTTTAAATAAAGCCGCGGTAGCACGTTATGCGCGTACCCTTTCCACCACCTTTGCTGCCGGTGTGCCGCTAA
TTGAAGCGCTGGAATCTGCTGCTGGCGCAGCGGGTAATGAAGTGTATAAAAATGCCATTTTGTTTATTCGCGAAGAGGTC
TCAGTAGGTAACCAGATGCATTTGGCTATGAAGCAAACCGACCAGTTTCCAGAAATGGTGGTGCAAATGGTATCAATTGG
TGAAGAGTCCGGTGCGCTTGATAGCATGCTGGCTAAGGTCGCTAATATTTATGAGCAAGAAGTTGACGATGCAGTTGACG
GTTTAACGGCGTTGTTAGAGCCACTAATTATGGCGGTATTGGGTGTATTAATAGGCGGTTTAATTATTGCCATGTACCTA
CCCATTTTCCAGATGGGATCTATTATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P6VPB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.343

96.822

0.575
  pilC Legionella pneumophila strain ERS1305867

54.637

97.555

0.533
  pilC Acinetobacter baylyi ADP1

52.826

99.511

0.526
  pilC Acinetobacter baumannii D1279779

53.086

99.022

0.526
  pilC Vibrio cholerae strain A1552

42.476

100

0.428
  pilG Neisseria gonorrhoeae MS11

42.928

98.533

0.423
  pilG Neisseria meningitidis 44/76-A

42.893

98.044

0.421
  pilC Vibrio campbellii strain DS40M4

40.648

98.044

0.399
  pilC Thermus thermophilus HB27

39.109

98.778

0.386

Multiple sequence alignment