Detailed information NTG0349833

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: E0Z06_RS02630
• Genome accession: NZ_CP037745
• Coordinates: 549189..550067 (-)
• Length: 292 a.a.
• NCBI ID: WP_132581630.1
• Uniprot ID: A0A4P6VNG5
• Organism: Rheinheimera sp. D18
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 544189..555067

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E0Z06_RS02605 (E0Z06_02605)	secA	544191..546911 (+)	2721	WP_132581620.1	preprotein translocase subunit SecA	-
E0Z06_RS02610 (E0Z06_02610)	mutT	547105..547518 (+)	414	WP_132581622.1	8-oxo-dGTP diphosphatase MutT	-
E0Z06_RS02615 (E0Z06_02615)	yacG	547515..547742 (-)	228	WP_132581624.1	DNA gyrase inhibitor YacG	-
E0Z06_RS02620 (E0Z06_02620)	zapD	547772..548518 (-)	747	WP_132581626.1	cell division protein ZapD	-
E0Z06_RS02625 (E0Z06_02625)	coaE	548564..549172 (-)	609	WP_132581628.1	dephospho-CoA kinase	-
E0Z06_RS02630 (E0Z06_02630)	pilD	549189..550067 (-)	879	WP_132581630.1	A24 family peptidase	Machinery gene
E0Z06_RS02635 (E0Z06_02635)	pilC	550067..551296 (-)	1230	WP_132581632.1	type II secretion system F family protein	Machinery gene
E0Z06_RS02640 (E0Z06_02640)	pilB	551377..553068 (-)	1692	WP_132581634.1	type IV-A pilus assembly ATPase PilB	Machinery gene
E0Z06_RS02645 (E0Z06_02645)	nadS	553489..553776 (-)	288	WP_132581636.1	NadS family protein	-
E0Z06_RS02650 (E0Z06_02650)	-	553778..554131 (-)	354	WP_243695547.1	type II toxin-antitoxin system RelE/ParE family toxin	-
E0Z06_RS02655 (E0Z06_02655)	-	554401..554850 (-)	450	WP_347812433.1	pilin	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32078.16 Da
• Isoelectric Point: 8.0782

>NTDB_id=349833 E0Z06_RS02630 WP_132581630.1 549189..550067(-) (pilD) [Rheinheimera sp. D18]
MSSVTEALVAFPVLFIVIAVILGLIIGSFLNVVIYRLPKMMENDWRQEYQAYFSPDGTAQAPAKFNLATPRSACPSCNAM
VQARDNIPVLSWLLLKGKCRNCRTSISARYPLVELLTAVMSAVVAWQLGFGIAAIVFIVITWALITLTFIDIDKMLLPDQ
ITLPLLWFALLFSLSDSAFVNPAQAMVGAAAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAIFGALLGWQQLPLIILLSS
LVGAVVGITLLSVQDKDRSTPIPFGPYIAAAGWIAMLWGEQLTNAYLRYLNL

Nucleotide

• Length: 879 bp

>NTDB_id=349833 E0Z06_RS02630 WP_132581630.1 549189..550067(-) (pilD) [Rheinheimera sp. D18]
ATGTCGTCAGTTACCGAAGCGTTAGTTGCTTTTCCAGTATTATTTATTGTTATTGCCGTAATTTTAGGTTTAATCATTGG
CAGCTTTTTAAATGTCGTTATTTATCGCCTACCAAAAATGATGGAAAACGACTGGCGGCAGGAATATCAGGCGTACTTTA
GCCCTGATGGCACAGCACAAGCACCGGCAAAATTTAACCTAGCAACGCCACGCTCGGCTTGCCCAAGCTGTAATGCTATG
GTTCAGGCGCGTGATAATATACCTGTGCTTAGCTGGTTGCTATTAAAAGGCAAATGCCGTAATTGCCGCACCAGCATTAG
CGCACGTTACCCGTTAGTAGAATTATTAACGGCGGTAATGTCGGCCGTAGTAGCCTGGCAGCTAGGCTTTGGTATTGCCG
CTATAGTATTTATTGTTATTACCTGGGCGTTAATTACGCTGACTTTTATCGACATTGATAAGATGTTGCTACCCGATCAA
ATTACCCTACCCTTACTCTGGTTTGCGTTGTTATTTAGCCTTAGCGATTCAGCTTTTGTTAATCCAGCACAAGCTATGGT
CGGCGCCGCTGCGGGCTACCTTAGCTTATGGTCGGTGTATTGGTTATTTAAGTTATTAACCGGCAAAGAAGGCATGGGTT
ATGGCGACTTTAAATTACTGGCCATATTTGGCGCCTTACTGGGCTGGCAGCAGTTGCCGCTGATTATTTTACTGTCGTCT
TTAGTGGGTGCGGTGGTTGGTATTACGCTGCTTAGTGTGCAAGACAAGGATAGAAGCACACCTATTCCGTTTGGGCCTTA
TATTGCAGCGGCAGGCTGGATAGCCATGTTATGGGGCGAGCAATTAACCAATGCCTACTTACGCTATTTAAATTTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

3D structure

• AlphaFold DB: A0A4P6VNG5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.319	96.575	0.534
pilD	Vibrio campbellii strain DS40M4	54.417	96.918	0.527
pilD	Acinetobacter baumannii D1279779	51.095	93.836	0.479
pilD	Acinetobacter nosocomialis M2	50.73	93.836	0.476
pilD	Neisseria gonorrhoeae MS11	47.86	88.014	0.421