Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EZV72_RS04780 Genome accession   NZ_CP036536
Coordinates   1120045..1121253 (-) Length   402 a.a.
NCBI ID   WP_137166163.1    Uniprot ID   -
Organism   Salinimonas lutimaris strain DPSR-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1115045..1126253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZV72_RS04755 - 1116359..1117222 (-) 864 WP_137166158.1 aspartoacylase -
  EZV72_RS04760 yacG 1117234..1117464 (-) 231 WP_137166159.1 DNA gyrase inhibitor YacG -
  EZV72_RS04765 zapD 1117529..1118281 (-) 753 WP_137166160.1 cell division protein ZapD -
  EZV72_RS04770 coaE 1118351..1118977 (-) 627 WP_137166161.1 dephospho-CoA kinase -
  EZV72_RS04775 pilD 1118974..1119849 (-) 876 WP_137166162.1 A24 family peptidase Machinery gene
  EZV72_RS04780 pilC 1120045..1121253 (-) 1209 WP_137166163.1 type II secretion system F family protein Machinery gene
  EZV72_RS18710 - 1121308..1121754 (-) 447 WP_137166164.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  EZV72_RS04790 nadC 1122014..1122874 (-) 861 WP_137166165.1 carboxylating nicotinate-nucleotide diphosphorylase -
  EZV72_RS04795 - 1123007..1123513 (-) 507 WP_137166166.1 TIGR02281 family clan AA aspartic protease -
  EZV72_RS04800 ampD 1123743..1124282 (+) 540 WP_137166167.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  EZV72_RS04805 ampE 1124330..1125139 (+) 810 WP_137166168.1 regulatory signaling modulator protein AmpE -
  EZV72_RS04810 - 1125480..1126226 (+) 747 WP_137166169.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43359.99 Da        Isoelectric Point: 9.8889

>NTDB_id=349514 EZV72_RS04780 WP_137166163.1 1120045..1121253(-) (pilC) [Salinimonas lutimaris strain DPSR-4]
MAKTATVFDWQGKDRQGASRKGEISALSLAEAKNLLRRQGISAHKVKKQQKSLFGGGKKINAADIAVFTRQVATMLGAGV
TILQSVEMIAQGHGKPDMRKMLMSIADDVRAGTPLSRSLRKFPLYFDDLYCDLVSTGEQSGSLENIFDRLATYKEKAEAL
KSKIKKAMFYPIAVLVVAFIVTTILLIFVVPQFEEIFAGFGAELPAFTLFVLAISRGMQDYGIFVGAAVFGAGFMFVRAH
RKSRALRDKVDAATLKIPVIGEILKKAAIARFTRTLSTTFSAGVPLIGALDSAAGASGNAVYREAILFIKKEVAGGMQMN
TAMRATNVFPDMVNQMVAIGEESGAVDEMLSKVATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFQMGN
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=349514 EZV72_RS04780 WP_137166163.1 1120045..1121253(-) (pilC) [Salinimonas lutimaris strain DPSR-4]
ATGGCTAAAACAGCAACGGTATTTGATTGGCAAGGCAAGGATCGCCAGGGCGCCAGCCGTAAAGGGGAGATTTCAGCCCT
GAGCCTGGCTGAGGCCAAAAACCTGCTTCGCCGTCAGGGTATTTCTGCCCACAAAGTCAAAAAACAACAAAAGTCTTTAT
TTGGTGGCGGTAAAAAAATCAATGCGGCTGATATTGCTGTTTTCACCCGTCAGGTCGCCACTATGCTGGGGGCCGGCGTC
ACCATTTTGCAGTCTGTTGAAATGATTGCCCAGGGCCATGGCAAGCCGGATATGCGCAAAATGCTGATGAGCATTGCTGA
TGATGTGCGCGCAGGCACGCCGTTATCCCGCTCGCTACGTAAATTCCCGCTCTACTTTGATGATTTATACTGCGATCTGG
TCAGTACCGGTGAGCAGTCCGGTTCGCTGGAAAATATTTTTGACCGCCTGGCCACCTACAAAGAAAAAGCCGAAGCGCTG
AAAAGCAAAATTAAAAAAGCCATGTTCTACCCGATTGCGGTACTGGTGGTAGCCTTTATTGTGACCACCATTTTGCTGAT
CTTTGTGGTGCCTCAGTTTGAAGAGATCTTTGCAGGTTTTGGTGCCGAGTTGCCCGCCTTTACCTTGTTTGTACTGGCGA
TTTCCCGGGGCATGCAGGACTACGGTATTTTTGTGGGCGCTGCTGTATTTGGCGCCGGCTTTATGTTTGTTCGCGCCCAT
CGCAAATCCAGAGCATTGCGGGACAAAGTCGATGCCGCCACGCTGAAGATACCGGTGATTGGTGAAATTTTGAAAAAAGC
CGCCATTGCGCGCTTTACCCGCACCCTGTCTACCACCTTTTCAGCCGGTGTCCCCCTGATTGGCGCGCTGGACTCAGCGG
CCGGAGCCTCGGGCAATGCGGTATATCGTGAAGCCATTTTGTTTATTAAAAAAGAAGTGGCCGGTGGTATGCAGATGAAC
ACTGCCATGCGGGCCACCAATGTGTTTCCGGATATGGTTAATCAGATGGTGGCCATTGGTGAGGAGTCTGGTGCGGTAGA
TGAAATGCTCAGCAAGGTTGCCACAATTTATGAAGCCGAAGTGGATGATATGGTTGATGGCCTGACCAGCCTGCTGGAGC
CAATGATTATGGCTGTATTGGGGGTGGTAATTGGTGGTTTGATTGTGGCCATGTACCTGCCCATCTTTCAGATGGGTAAT
GTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

61.713

98.756

0.609
  pilC Acinetobacter baylyi ADP1

52.736

100

0.527
  pilC Legionella pneumophila strain ERS1305867

52.778

98.507

0.52
  pilC Acinetobacter baumannii D1279779

51.117

100

0.512
  pilG Neisseria meningitidis 44/76-A

44.802

100

0.45
  pilC Vibrio cholerae strain A1552

45.707

98.507

0.45
  pilG Neisseria gonorrhoeae MS11

44.554

100

0.448
  pilC Vibrio campbellii strain DS40M4

44.444

98.507

0.438
  pilC Thermus thermophilus HB27

38.462

100

0.386

Multiple sequence alignment