Detailed information NTG0349513

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EZV72_RS04775
• Genome accession: NZ_CP036536
• Coordinates: 1118974..1119849 (-)
• Length: 291 a.a.
• NCBI ID: WP_137166162.1
• Uniprot ID: -
• Organism: Salinimonas lutimaris strain DPSR-4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1113974..1124849

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EZV72_RS04745	-	1114644..1115012 (+)	369	WP_137166156.1	response regulator	-
EZV72_RS04750	-	1115022..1116308 (+)	1287	WP_137166157.1	methyl-accepting chemotaxis protein	-
EZV72_RS04755	-	1116359..1117222 (-)	864	WP_137166158.1	aspartoacylase	-
EZV72_RS04760	yacG	1117234..1117464 (-)	231	WP_137166159.1	DNA gyrase inhibitor YacG	-
EZV72_RS04765	zapD	1117529..1118281 (-)	753	WP_137166160.1	cell division protein ZapD	-
EZV72_RS04770	coaE	1118351..1118977 (-)	627	WP_137166161.1	dephospho-CoA kinase	-
EZV72_RS04775	pilD	1118974..1119849 (-)	876	WP_137166162.1	A24 family peptidase	Machinery gene
EZV72_RS04780	pilC	1120045..1121253 (-)	1209	WP_137166163.1	type II secretion system F family protein	Machinery gene
EZV72_RS18710	-	1121308..1121754 (-)	447	WP_137166164.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
EZV72_RS04790	nadC	1122014..1122874 (-)	861	WP_137166165.1	carboxylating nicotinate-nucleotide diphosphorylase	-
EZV72_RS04795	-	1123007..1123513 (-)	507	WP_137166166.1	TIGR02281 family clan AA aspartic protease	-
EZV72_RS04800	ampD	1123743..1124282 (+)	540	WP_137166167.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 31888.01 Da
• Isoelectric Point: 6.7272

>NTDB_id=349513 EZV72_RS04775 WP_137166162.1 1118974..1119849(-) (pilD) [Salinimonas lutimaris strain DPSR-4]
MNALIELSQQNMAFYLGLVAAVSLMVGSFLNVVIYRLPVMMERSFKAECEAYTHPEQEPAPQPAFNLVKPDSTCPHCGHN
IRAWENIPIISYLFLKGRCASCKASISVRYPLVEAATALLCTWVAWHFGPTMQGLAAVLVCYLLVAMIMIDFDHMLLPDQ
LTLPMLWFGLLLSLNNVFVDAHTAIIGAAAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAALGAFTGWQGLPVIIILSSL
VGAVIGIALMLKQGKDGTLAIPFGPYLAIAGLLTLLYKQPIIDAYLQWVLA

Nucleotide

• Length: 876 bp

>NTDB_id=349513 EZV72_RS04775 WP_137166162.1 1118974..1119849(-) (pilD) [Salinimonas lutimaris strain DPSR-4]
ATGAATGCACTCATTGAATTAAGCCAGCAGAACATGGCGTTTTACCTGGGCCTGGTGGCTGCTGTCAGCCTGATGGTGGG
CAGCTTTCTAAACGTGGTGATTTACCGCCTGCCGGTCATGATGGAGCGCAGCTTTAAAGCCGAATGCGAGGCCTACACCC
ACCCTGAGCAGGAACCCGCTCCCCAGCCTGCGTTTAACCTGGTTAAACCGGACAGTACCTGCCCGCATTGTGGGCATAAC
ATTCGTGCATGGGAAAATATTCCCATTATCAGCTACCTGTTTTTAAAGGGCCGCTGCGCCAGCTGCAAAGCGTCGATTTC
TGTGCGCTATCCACTGGTAGAAGCTGCCACAGCGCTACTGTGTACCTGGGTGGCCTGGCATTTTGGCCCCACTATGCAAG
GGCTGGCCGCGGTACTGGTGTGCTATCTGCTGGTTGCCATGATAATGATCGATTTTGACCATATGCTGCTGCCCGACCAG
CTTACCCTGCCTATGTTGTGGTTTGGCTTGTTGTTAAGCCTGAACAATGTGTTTGTTGATGCTCACACCGCCATTATTGG
CGCGGCGGCCGGCTACCTGAGCCTGTGGTCTGTATACTGGTTATTTAAGCTCATTACCGGCAAAGAAGGCATGGGTTATG
GCGATTTTAAACTGCTGGCTGCGCTGGGTGCCTTTACCGGCTGGCAGGGGTTGCCGGTGATTATTATTCTGTCATCACTG
GTAGGCGCGGTGATTGGCATTGCCCTGATGCTCAAACAAGGCAAAGACGGCACCCTGGCCATCCCGTTTGGACCGTATCT
GGCCATTGCAGGCTTATTAACCCTGCTGTATAAACAGCCCATTATCGATGCGTATTTACAATGGGTACTGGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (23-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.273	94.502	0.522
pilD	Vibrio campbellii strain DS40M4	52.222	92.784	0.485
pilD	Acinetobacter baumannii D1279779	47.902	98.282	0.471
pilD	Acinetobacter nosocomialis M2	47.902	98.282	0.471
pilD	Neisseria gonorrhoeae MS11	44.928	94.845	0.426