Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EXU30_RS11470 Genome accession   NZ_CP036200
Coordinates   2668515..2669768 (-) Length   417 a.a.
NCBI ID   WP_130600170.1    Uniprot ID   A0A411PID1
Organism   Shewanella maritima strain D4-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2663515..2674768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXU30_RS11440 (EXU30_11440) leuD 2664586..2665191 (+) 606 WP_130600158.1 3-isopropylmalate dehydratase small subunit -
  EXU30_RS11445 (EXU30_11445) mutT 2665436..2665843 (-) 408 WP_130600160.1 8-oxo-dGTP diphosphatase MutT -
  EXU30_RS11450 (EXU30_11450) yacG 2665850..2666077 (-) 228 WP_130600162.1 DNA gyrase inhibitor YacG -
  EXU30_RS11455 (EXU30_11455) zapD 2666119..2666853 (-) 735 WP_130600164.1 cell division protein ZapD -
  EXU30_RS11460 (EXU30_11460) coaE 2666883..2667507 (-) 625 Protein_2253 dephospho-CoA kinase -
  EXU30_RS11465 (EXU30_11465) pilD 2667527..2668468 (-) 942 WP_130600168.1 A24 family peptidase Machinery gene
  EXU30_RS11470 (EXU30_11470) pilC 2668515..2669768 (-) 1254 WP_130600170.1 type II secretion system F family protein Machinery gene
  EXU30_RS11475 (EXU30_11475) pilB 2669836..2671545 (-) 1710 WP_130600172.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EXU30_RS11480 (EXU30_11480) - 2671655..2672992 (-) 1338 WP_242620407.1 sulfatase-like hydrolase/transferase -
  EXU30_RS20610 - 2672893..2673621 (-) 729 WP_242620197.1 hypothetical protein -
  EXU30_RS20790 (EXU30_11485) pilA 2673691..2674128 (-) 438 WP_130600176.1 pilin Machinery gene

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45492.45 Da        Isoelectric Point: 10.0206

>NTDB_id=347509 EXU30_RS11470 WP_130600170.1 2668515..2669768(-) (pilC) [Shewanella maritima strain D4-2]
MATARANKKAGSNVKHQPKVFTFEWKGTNKDGQRTSGELRGSSIAEIRSVLKAQGISPKGVRKKAAPLFKTEKKISAMDI
AMITRQIATMLAAGVPLVTTIELLGKGHEKAKMRELLATILSDVQAGIPLSDSLKPHRQYFDDLYVDLVAAGEHSGSLDA
VFDRIAIYKEKAEALKSKIKKAMFYPAAVVVVAVAVTTLLLLFVVPQFEDIFNGFGAELPAFTQMIINISRWLQGSWYFF
VIGIAAAIFLFRRSHRNSQVFRDQVDTYILKIPAVGDILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYRNA
LNKVRTEVMAGMQMNVAMRTTRLFPDMLIQMVMIGEESGGLDDMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIGTLVG
GLIVGMYLPIFQMGNVV

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=347509 EXU30_RS11470 WP_130600170.1 2668515..2669768(-) (pilC) [Shewanella maritima strain D4-2]
ATGGCTACTGCAAGAGCCAACAAAAAAGCAGGCAGCAATGTAAAACACCAGCCGAAAGTTTTTACCTTTGAGTGGAAAGG
TACCAACAAGGACGGTCAACGTACATCTGGCGAATTACGCGGAAGTTCTATTGCAGAAATCCGCAGTGTTTTAAAAGCAC
AGGGGATTTCTCCAAAAGGAGTACGTAAAAAGGCTGCCCCATTATTTAAGACTGAGAAAAAGATCTCTGCAATGGACATT
GCAATGATCACTCGTCAAATTGCAACTATGCTTGCCGCTGGTGTTCCCTTGGTAACAACAATCGAACTATTAGGCAAAGG
GCACGAAAAAGCTAAAATGCGAGAGCTCTTAGCGACTATTCTTTCTGATGTGCAAGCAGGTATTCCTCTTTCTGACTCTC
TTAAGCCTCACAGGCAGTATTTTGACGACCTTTATGTCGACTTAGTTGCAGCAGGTGAGCATTCAGGTTCTTTGGATGCA
GTCTTTGATCGAATAGCGATCTATAAAGAGAAAGCTGAAGCCCTAAAATCAAAAATTAAGAAAGCTATGTTTTACCCTGC
AGCGGTTGTTGTTGTGGCAGTCGCTGTTACAACATTACTGCTTTTATTTGTAGTGCCACAATTTGAGGATATTTTTAACG
GCTTTGGTGCGGAGTTACCCGCTTTCACCCAAATGATCATTAATATCTCACGTTGGCTGCAAGGGTCTTGGTACTTCTTT
GTCATTGGGATTGCAGCTGCAATATTTTTGTTTAGGCGAAGCCATAGAAATTCTCAGGTATTCCGAGATCAAGTTGATAC
CTACATATTAAAAATACCTGCTGTTGGCGACATTTTACATAAAGCCGCTATGGCTCGCTTTGCCCGAACGCTAGCAACCA
CCTTCGCAGCAGGTGTTCCACTAATTGATGGCTTAGAATCTGCGGCGGGCGCATCCGGCAATGCTGTCTACCGAAATGCA
CTGAACAAAGTGCGTACCGAGGTCATGGCCGGTATGCAAATGAATGTAGCTATGCGAACCACGCGTTTATTCCCTGATAT
GCTAATTCAAATGGTAATGATTGGTGAAGAGTCTGGTGGATTAGACGACATGCTCAACAAAATCGCCAATATTTATGAAA
TGCAGGTAGATGACGCGGTGGATGGCCTTTCAAGCCTGATCGAGCCAATTATGATGGTAGTAATTGGTACGCTAGTCGGC
GGTTTGATCGTCGGCATGTACCTGCCAATCTTCCAAATGGGTAATGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411PID1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.443

94.724

0.525
  pilC Acinetobacter baylyi ADP1

50.378

95.204

0.48
  pilC Acinetobacter baumannii D1279779

49.261

97.362

0.48
  pilC Legionella pneumophila strain ERS1305867

49.01

96.882

0.475
  pilC Vibrio cholerae strain A1552

47.475

94.964

0.451
  pilC Vibrio campbellii strain DS40M4

44.389

96.163

0.427
  pilG Neisseria meningitidis 44/76-A

41.397

96.163

0.398
  pilG Neisseria gonorrhoeae MS11

41.397

96.163

0.398

Multiple sequence alignment