Detailed information NTG0347508

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EXU30_RS11465
• Genome accession: NZ_CP036200
• Coordinates: 2667527..2668468 (-)
• Length: 313 a.a.
• NCBI ID: WP_130600168.1
• Uniprot ID: A0A411PI06
• Organism: Shewanella maritima strain D4-2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2662527..2673468

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EXU30_RS11435 (EXU30_11435)	leuC	2663150..2664553 (+)	1404	WP_130600156.1	3-isopropylmalate dehydratase large subunit	-
EXU30_RS11440 (EXU30_11440)	leuD	2664586..2665191 (+)	606	WP_130600158.1	3-isopropylmalate dehydratase small subunit	-
EXU30_RS11445 (EXU30_11445)	mutT	2665436..2665843 (-)	408	WP_130600160.1	8-oxo-dGTP diphosphatase MutT	-
EXU30_RS11450 (EXU30_11450)	yacG	2665850..2666077 (-)	228	WP_130600162.1	DNA gyrase inhibitor YacG	-
EXU30_RS11455 (EXU30_11455)	zapD	2666119..2666853 (-)	735	WP_130600164.1	cell division protein ZapD	-
EXU30_RS11460 (EXU30_11460)	coaE	2666883..2667507 (-)	625	Protein_2253	dephospho-CoA kinase	-
EXU30_RS11465 (EXU30_11465)	pilD	2667527..2668468 (-)	942	WP_130600168.1	A24 family peptidase	Machinery gene
EXU30_RS11470 (EXU30_11470)	pilC	2668515..2669768 (-)	1254	WP_130600170.1	type II secretion system F family protein	Machinery gene
EXU30_RS11475 (EXU30_11475)	pilB	2669836..2671545 (-)	1710	WP_130600172.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EXU30_RS11480 (EXU30_11480)	-	2671655..2672992 (-)	1338	WP_242620407.1	sulfatase-like hydrolase/transferase	-

Sequence

Protein

• Length: 313 a.a.
• Molecular weight: 34833.38 Da
• Isoelectric Point: 8.0224

>NTDB_id=347508 EXU30_RS11465 WP_130600168.1 2667527..2668468(-) (pilD) [Shewanella maritima strain D4-2]
MTEFLSSFTSSFVSTMSQTPWLFVVISFIFAATIGSFLNVVIHRLPVMMKREWQSECNFYLDEYHPDIVKQVGKGKLEKP
IDEYPQKYNLIVPTSACPKCKAKIKPWHNLPIFGWLLLKGKCANCQTSISPRYPIFEFITGALVATLAYYLGPTTQFALA
TLLTFALIALTGIDLDEMLLPDQITLPLLWLGLIINYQGVFVSLEDAVIGAAAGYLSLWSVFWGFKLLTGKEGMGYGDFK
LMAVFGAWLGWQMLPLIILLSSLVGAVIGIAMIATKKLHSGKPIPFGPYIAIAGWIALIWGHDIINWYLGSFV

Nucleotide

• Length: 942 bp

>NTDB_id=347508 EXU30_RS11465 WP_130600168.1 2667527..2668468(-) (pilD) [Shewanella maritima strain D4-2]
ATGACCGAATTTTTATCTTCTTTTACTTCTAGTTTTGTATCCACAATGAGCCAGACTCCCTGGCTTTTTGTGGTTATTAG
CTTTATTTTCGCTGCCACTATCGGCAGTTTTTTAAATGTGGTGATTCACCGTCTGCCAGTTATGATGAAGCGTGAATGGC
AAAGCGAGTGCAACTTCTATCTAGATGAATATCATCCAGATATCGTTAAACAAGTTGGTAAAGGCAAGCTTGAAAAGCCA
ATTGATGAATACCCGCAAAAGTACAATCTAATTGTACCTACATCAGCTTGCCCTAAGTGCAAAGCCAAAATAAAACCTTG
GCACAATTTGCCTATCTTTGGTTGGTTACTACTTAAAGGCAAGTGCGCAAATTGCCAAACCAGCATTTCACCACGTTACC
CAATTTTTGAGTTTATCACCGGCGCTTTGGTTGCCACGCTGGCATATTATTTAGGCCCAACGACACAATTTGCTCTAGCA
ACACTACTCACCTTTGCTTTAATCGCACTAACAGGCATCGATTTGGACGAAATGCTGCTGCCAGATCAAATTACCCTGCC
GCTATTGTGGCTAGGCCTAATCATTAACTATCAAGGGGTGTTCGTCAGCCTAGAGGATGCGGTGATTGGTGCAGCCGCCG
GTTACCTAAGTTTATGGAGTGTATTCTGGGGCTTCAAGCTGTTAACAGGTAAAGAAGGCATGGGCTACGGCGATTTCAAA
TTGATGGCAGTATTTGGTGCCTGGCTCGGCTGGCAAATGCTACCTTTGATTATCCTGCTATCTTCATTAGTCGGCGCGGT
GATTGGTATAGCAATGATTGCCACCAAGAAACTACATTCAGGTAAGCCAATTCCATTTGGCCCTTATATCGCAATTGCTG
GTTGGATAGCGTTAATTTGGGGGCACGATATTATCAATTGGTACCTAGGCTCATTTGTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (163-270)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (29-149)

3D structure

• AlphaFold DB: A0A411PI06

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	52.218	93.61	0.489
pilD	Vibrio cholerae strain A1552	49.662	94.569	0.47
pilD	Acinetobacter nosocomialis M2	46.713	92.332	0.431
pilD	Acinetobacter baumannii D1279779	46.367	92.332	0.428
pilD	Neisseria gonorrhoeae MS11	44.828	92.652	0.415