Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   C9E88_RS01710 Genome accession   NZ_CP035934
Coordinates   375340..377430 (+) Length   696 a.a.
NCBI ID   WP_106983931.1    Uniprot ID   A0A7Y8PZL0
Organism   Acinetobacter cumulans strain WCHAc060092     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 370340..382430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9E88_RS01690 (C9E88_002580) comM 372390..373448 (+) 1059 WP_106983927.1 pilus assembly protein PilM Machinery gene
  C9E88_RS01695 (C9E88_002575) pilN 373448..374101 (+) 654 WP_106983928.1 PilN domain-containing protein Machinery gene
  C9E88_RS01700 (C9E88_002570) pilO 374098..374796 (+) 699 WP_106983929.1 type 4a pilus biogenesis protein PilO Machinery gene
  C9E88_RS01705 (C9E88_002565) pilP 374796..375323 (+) 528 WP_106983930.1 pilus assembly protein PilP Machinery gene
  C9E88_RS01710 (C9E88_002560) pilQ 375340..377430 (+) 2091 WP_106983931.1 type IV pilus secretin PilQ family protein Machinery gene
  C9E88_RS01715 (C9E88_002555) - 377518..378018 (+) 501 WP_240627350.1 shikimate kinase -
  C9E88_RS01720 (C9E88_002550) aroB 378032..379111 (+) 1080 WP_106983933.1 3-dehydroquinate synthase -
  C9E88_RS01725 (C9E88_002545) - 379126..379986 (+) 861 WP_106983934.1 hypothetical protein -

Sequence

Protein


Download         Length: 696 a.a.        Molecular weight: 75337.40 Da        Isoelectric Point: 5.6708

>NTDB_id=345148 C9E88_RS01710 WP_106983931.1 375340..377430(+) (pilQ) [Acinetobacter cumulans strain WCHAc060092]
MKNSMQDFIFGDGNTMNRMFRQFSMGAVAMAVMQAASAGVAVTNVVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLV
LDFDKAQQNLKQSSIPVATSEANSVDISSDAQRARLTVNLADAGAFTTRVEGNTFILKINAANALAPTPVAAQKQAQGIS
DIGFKRGSAGEGLVVIDLLGSNTPVDVQQQGSKIVVRTLGNKVPAHLARRLNVNDFATPVATVDAQNDRGSGLITISSSG
SYEYMAYQTDNRLTISLKRPEDKNPARAKASNHYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVNGNITLRLKDV
PWDQALDIVLKTKNLDKRRNGNVIWIAPVSELIKAEEDEAKAIEQSIKLAPIQTEYLKLSYAKVADIEKLITQSKTNNTG
GTNSGNNASDALLSSRGSISVDARTNTLIVNDTAQNIDKIRKMVDLLDVEVKQVMVEARIVTAQTEFSRELGVSWGLQRN
NPSLSAGANGSNVWGGDYSPKFDLGVDLATGTAGTFNFGLLKISDFMLDLQLTALQSDGHGEVLSAPKVMTGDKQKASIL
RGDQIPYQSWSAEGGTTTSFVDANLKLEVTPSITPDGKVQMDLKIEKDTIGELTSAGYLINTNKLETNVLVGDGETIVLG
GIFDDIKRNQYQKVPFLGDLPFVGVLFKNNVKTNAQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2091 bp        

>NTDB_id=345148 C9E88_RS01710 WP_106983931.1 375340..377430(+) (pilQ) [Acinetobacter cumulans strain WCHAc060092]
ATGAAAAATAGTATGCAAGATTTTATTTTTGGGGATGGCAATACAATGAACCGTATGTTTCGTCAGTTTTCTATGGGTGC
TGTAGCAATGGCTGTCATGCAAGCCGCAAGTGCGGGTGTTGCAGTGACGAATGTGGTGCCAATGCAAATTCCAGGACAGG
GTACTGAAATTCGTGTCATGTTCAATGGTTTGCCACCACAACCTCAAGCTTATCAGTTGGAACAGCCATCACGTTTAGTT
TTAGATTTTGATAAAGCACAGCAAAATCTTAAACAAAGCTCGATCCCAGTTGCGACCAGTGAAGCAAATTCTGTTGATAT
TAGTTCAGATGCGCAGCGCGCTCGTTTAACCGTCAATTTAGCTGATGCAGGCGCATTTACAACACGTGTTGAAGGGAATA
CGTTCATTCTAAAAATTAATGCGGCAAATGCATTGGCACCTACACCTGTAGCGGCGCAAAAGCAGGCACAAGGCATTTCT
GATATTGGGTTTAAACGTGGTTCAGCTGGCGAAGGCTTAGTTGTTATTGATTTGTTAGGAAGCAATACCCCTGTTGATGT
ACAACAACAAGGTAGCAAAATTGTTGTACGTACTTTAGGGAATAAAGTACCAGCACATTTGGCACGTCGTTTGAATGTGA
ATGATTTTGCGACACCTGTTGCTACGGTAGATGCACAAAATGATCGTGGTAGTGGGTTGATTACGATTTCATCGAGTGGT
AGTTATGAATACATGGCTTATCAGACAGATAATCGACTAACCATTAGCTTAAAGCGTCCTGAAGATAAAAACCCAGCGCG
TGCAAAAGCTTCAAATCACTATACGGGCAAAAAGATCTCTTTAGATTTCCAAGATATTGAAGTACGTCGTGTATTACAGT
TACTTGCAGATTTTACAGATATCAATATGGTTGCTGCGGATTCTGTAAATGGCAATATTACATTACGTTTAAAAGATGTT
CCTTGGGATCAAGCATTAGATATTGTACTAAAAACTAAGAATTTAGATAAGCGTAGAAATGGTAATGTCATTTGGATTGC
ACCTGTTTCAGAGTTGATTAAAGCAGAAGAAGATGAAGCAAAAGCCATTGAGCAGAGTATAAAACTTGCACCAATTCAAA
CAGAATACTTAAAGCTAAGCTATGCCAAAGTTGCTGATATTGAAAAGTTAATTACACAAAGTAAGACCAACAATACGGGT
GGTACAAATAGTGGTAATAATGCTTCTGATGCATTACTTAGTTCACGTGGTTCAATCTCAGTGGATGCGCGAACTAACAC
TTTAATTGTCAATGATACAGCTCAAAATATTGATAAAATCCGTAAGATGGTCGATTTACTTGATGTTGAAGTGAAGCAGG
TCATGGTTGAGGCGCGAATAGTTACAGCTCAAACAGAATTTTCACGTGAGTTGGGTGTGAGTTGGGGCTTGCAACGTAAT
AATCCAAGCTTAAGTGCTGGTGCAAACGGTTCAAACGTTTGGGGTGGAGATTATTCGCCTAAGTTTGATCTAGGTGTGGA
CTTGGCGACTGGGACAGCGGGAACCTTTAATTTTGGTTTGTTAAAGATTTCTGATTTTATGTTGGATTTACAATTAACTG
CGCTACAGTCTGATGGTCATGGTGAGGTTTTATCAGCACCAAAAGTGATGACTGGGGATAAGCAGAAGGCATCAATTTTA
CGTGGTGATCAAATTCCATATCAATCGTGGAGTGCTGAGGGTGGTACGACAACTAGCTTCGTTGATGCTAACCTAAAGTT
AGAAGTCACGCCGAGTATTACGCCTGATGGCAAAGTACAAATGGATCTCAAAATCGAAAAAGATACCATTGGTGAACTGA
CTTCGGCTGGTTATCTAATCAATACAAACAAACTTGAAACCAATGTTCTAGTTGGTGATGGTGAGACGATTGTATTGGGT
GGTATTTTTGATGATATCAAACGTAATCAGTATCAAAAAGTTCCATTCCTAGGTGATTTACCATTTGTTGGAGTGTTGTT
TAAAAACAATGTGAAGACAAATGCGCAAACTGAGTTGCTAATTTTTGTTACGCCACGAATTGTTAATGACAGTGTTTCAA
GAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(55-135)

Secretin and TonB N terminus short domain (STN)

(306-348)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-453)

Bacterial type II and III secretion system protein (Secretin)

(534-688)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8PZL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

65.56

100

0.681
  pilQ Acinetobacter baumannii strain A118

65.422

100

0.68
  comQ Acinetobacter baylyi ADP1

64.326

100

0.658
  pilQ Pseudomonas aeruginosa PAK

41.389

99.282

0.411
  pilQ Legionella pneumophila strain ERS1305867

37.649

96.552

0.364
  pilQ Legionella pneumophila strain Lp02

37.649

96.552

0.364

Multiple sequence alignment