Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C9E88_RS01495 Genome accession   NZ_CP035934
Coordinates   329309..330535 (-) Length   408 a.a.
NCBI ID   WP_106983893.1    Uniprot ID   A0A7Y8U1B2
Organism   Acinetobacter cumulans strain WCHAc060092     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 324309..335535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9E88_RS01470 (C9E88_002800) - 325636..325959 (+) 324 WP_106983888.1 pyrimidine/purine nucleoside phosphorylase -
  C9E88_RS01475 (C9E88_002795) rlmB 326105..326854 (+) 750 WP_106983889.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  C9E88_RS01480 (C9E88_002790) - 326902..327777 (+) 876 WP_106983890.1 DMT family transporter -
  C9E88_RS01485 (C9E88_002785) coaE 327824..328432 (-) 609 WP_106983891.1 dephospho-CoA kinase -
  C9E88_RS01490 (C9E88_002780) pilD 328446..329309 (-) 864 WP_106983892.1 A24 family peptidase Machinery gene
  C9E88_RS01495 (C9E88_002775) pilC 329309..330535 (-) 1227 WP_106983893.1 type II secretion system F family protein Machinery gene
  C9E88_RS01500 (C9E88_002770) pilB 330564..332276 (-) 1713 WP_106983894.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C9E88_RS01505 (C9E88_002765) tpiA 332555..333346 (+) 792 WP_106983895.1 triose-phosphate isomerase -
  C9E88_RS01510 (C9E88_002760) secG 333360..333689 (+) 330 WP_106983896.1 preprotein translocase subunit SecG -
  C9E88_RS01535 (C9E88_002735) rimP 334467..334991 (+) 525 WP_106983897.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44916.27 Da        Isoelectric Point: 9.7350

>NTDB_id=345142 C9E88_RS01495 WP_106983893.1 329309..330535(-) (pilC) [Acinetobacter cumulans strain WCHAc060092]
MAVKKGQMMPTFSYEGVDRKGAKIKGEMPARNMALAKVTLRKQGITIKNIREKRKNILEGFMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVVVVALIVTIILMVKVVPVFEELFTSFGADLPAFTKMVVNMSQWTQQYWFILIIVIAAIIA
GFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNCVYEEAVLKIRDDVA
TGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=345142 C9E88_RS01495 WP_106983893.1 329309..330535(-) (pilC) [Acinetobacter cumulans strain WCHAc060092]
ATGGCTGTCAAAAAAGGGCAGATGATGCCAACCTTCAGTTATGAAGGGGTTGACCGTAAAGGGGCCAAAATTAAAGGGGA
AATGCCTGCGCGCAATATGGCGCTGGCAAAAGTCACTTTGCGTAAGCAAGGGATTACCATCAAGAATATTCGTGAAAAGC
GTAAAAATATTCTTGAAGGCTTTATGAAAAAGAAAGTGACAACCTTAGATATCACGATCTTTACCCGTCAGTTGGCCACC
ATGATGAAAGCTGGTGTTCCATTGGTTCAAGGTTTTGAAATCGTCGCTGAAGGCTTAGAAAACCCTGCCATGCGCGAAGT
TGTATTAGGGATCAAAGGAGAAGTAGAAGGTGGTAATACCTTCGCTGGTGCTTTACGTAAATATCCACAATACTTTGATA
ACCTATTCTGCTCATTGGTGGAATCAGGCGAGCAGTCTGGTGCACTAGAAACCATGCTGGATCGTGTAGCCATCTATAAA
GAGAAGAGTGAACTTCTCAAACAAAAAATTAAAAAAGCCATGAAATATCCTGCGACAGTCGTTGTTGTCGCGCTGATTGT
TACAATCATTTTAATGGTCAAAGTTGTTCCAGTTTTTGAAGAACTCTTCACCTCTTTTGGTGCAGACCTTCCAGCTTTCA
CCAAAATGGTTGTGAATATGTCACAATGGACACAACAATATTGGTTTATTCTAATTATTGTTATTGCTGCCATTATTGCT
GGTTTTCTTGAAGCGAAAAAACGTAGTAAAAAATTCCGTGATTTTCTTGATAAAGCTGCACTCAAAGCTCCTATTTTTGG
TGACCTAGTTTATAAGGCGATTATCGCGCGTTATAGTCGTACGCTGGCAACCACTTTTGCTGCGGGTGTACCCTTAATTG
ATGCGCTAGAGTCTACCGCAGGCGCAACCAACAACTGTGTCTATGAAGAAGCGGTCTTAAAAATCCGCGATGATGTCGCA
ACTGGTCAACAATTGCAGTTTGCCATGCGCGTTACCAATAAATTCCCATCCATGGCGGTGCAAATGGTAGCGATTGGTGA
AGAATCTGGTGCTCTCGATTCAATGTTAGACAAAGTTGCAACCCATTATGAAAATGAAGTAGATAATGCCGTAGATGGCT
TAACAGCAATGATGGAACCTCTAATTATGGCAGTTTTAGGTGTACTTGTTGGTGGTCTCGTAATTGCCATGTATTTACCA
ATCTTCCAAATGGGTTCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8U1B2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.461

100

0.895
  pilC Acinetobacter baylyi ADP1

84.069

100

0.841
  pilC Pseudomonas stutzeri DSM 10701

61.209

97.304

0.596
  pilC Legionella pneumophila strain ERS1305867

53.266

97.549

0.52
  pilG Neisseria gonorrhoeae MS11

46.734

97.549

0.456
  pilG Neisseria meningitidis 44/76-A

46.482

97.549

0.453
  pilC Vibrio cholerae strain A1552

43.627

100

0.436
  pilC Vibrio campbellii strain DS40M4

42.893

98.284

0.422
  pilC Thermus thermophilus HB27

36.908

98.284

0.363

Multiple sequence alignment