Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   C9E88_RS01490 Genome accession   NZ_CP035934
Coordinates   328446..329309 (-) Length   287 a.a.
NCBI ID   WP_106983892.1    Uniprot ID   A0A7Y8U2S1
Organism   Acinetobacter cumulans strain WCHAc060092     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 323446..334309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9E88_RS01470 (C9E88_002800) - 325636..325959 (+) 324 WP_106983888.1 pyrimidine/purine nucleoside phosphorylase -
  C9E88_RS01475 (C9E88_002795) rlmB 326105..326854 (+) 750 WP_106983889.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  C9E88_RS01480 (C9E88_002790) - 326902..327777 (+) 876 WP_106983890.1 DMT family transporter -
  C9E88_RS01485 (C9E88_002785) coaE 327824..328432 (-) 609 WP_106983891.1 dephospho-CoA kinase -
  C9E88_RS01490 (C9E88_002780) pilD 328446..329309 (-) 864 WP_106983892.1 A24 family peptidase Machinery gene
  C9E88_RS01495 (C9E88_002775) pilC 329309..330535 (-) 1227 WP_106983893.1 type II secretion system F family protein Machinery gene
  C9E88_RS01500 (C9E88_002770) pilB 330564..332276 (-) 1713 WP_106983894.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C9E88_RS01505 (C9E88_002765) tpiA 332555..333346 (+) 792 WP_106983895.1 triose-phosphate isomerase -
  C9E88_RS01510 (C9E88_002760) secG 333360..333689 (+) 330 WP_106983896.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32057.45 Da        Isoelectric Point: 7.9588

>NTDB_id=345141 C9E88_RS01490 WP_106983892.1 328446..329309(-) (pilD) [Acinetobacter cumulans strain WCHAc060092]
MQDLVEYLIQNPTALYCVVGIFSLCIGSFLNVVIYRTPKMMEQEWRTDCTLFLHPEQPIIDETKITLSKPASTCPKCHTP
IRWYQNIPVISWISLKGKCGSCHNPISIRYPCIELLTAVCALIVVAVFGPTLQMLFGLVLTYMLIALTFIDFDTQLLPDR
YTLPLAALGLGINSYAIYVSPTASIWGYLLGFLCLWTVYYAFKLITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSF
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEKIMKIYLGQA

Nucleotide


Download         Length: 864 bp        

>NTDB_id=345141 C9E88_RS01490 WP_106983892.1 328446..329309(-) (pilD) [Acinetobacter cumulans strain WCHAc060092]
ATGCAAGATTTAGTAGAATATTTAATTCAAAACCCAACAGCGCTTTATTGCGTTGTTGGGATTTTTAGTCTCTGTATCGG
CAGTTTTTTAAATGTCGTTATATATCGCACCCCAAAAATGATGGAACAGGAATGGCGAACTGACTGCACACTTTTCCTTC
ACCCTGAACAACCTATCATTGATGAAACAAAGATCACATTAAGCAAGCCTGCCTCAACCTGCCCTAAGTGCCACACTCCA
ATTCGCTGGTATCAAAATATCCCCGTGATCAGCTGGATAAGCTTAAAAGGCAAATGCGGGAGTTGCCATAACCCAATTAG
TATTCGCTATCCTTGTATCGAATTACTCACAGCTGTCTGTGCTTTAATTGTTGTTGCTGTCTTTGGCCCAACGTTACAAA
TGCTCTTTGGTCTCGTGCTGACTTATATGCTGATCGCACTGACTTTTATCGATTTTGATACACAGCTTTTGCCAGATCGC
TACACCCTCCCCCTAGCTGCCCTAGGTTTAGGGATTAATAGCTATGCCATTTATGTCTCTCCGACCGCTTCGATTTGGGG
TTATTTACTGGGTTTTCTATGCTTATGGACTGTCTATTACGCATTTAAACTCATTACAGGCAAAGAAGGCATGGGCTATG
GTGATTTTAAATTATTAGCGGCTTTAGGCGCATGGATGGGGCCACTCATGTTGCCTCTCATTGTGCTTTTATCCTCTTTT
GTTGGTGCGATTATCGGTATTATTTTGCTCAAAGTTCGTAAAGAAAACCAGCCATTTGCTTTTGGCCCTTATATTGCCAT
TGCTGGTTGGATTGCGTTTTTATGGGGTGAGAAAATTATGAAAATCTATCTCGGTCAAGCATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8U2S1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

78.596

99.303

0.78
  pilD Acinetobacter baumannii D1279779

78.246

99.303

0.777
  pilD Vibrio cholerae strain A1552

54.307

93.031

0.505
  pilD Vibrio campbellii strain DS40M4

52.809

93.031

0.491
  pilD Neisseria gonorrhoeae MS11

47.015

93.38

0.439

Multiple sequence alignment