Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | EWA64_RS05840 | Genome accession | NZ_CP035921 |
| Coordinates | 1077625..1079313 (+) | Length | 562 a.a. |
| NCBI ID | WP_061895188.1 | Uniprot ID | - |
| Organism | Vibrio cidicii strain 2423-01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1072625..1084313
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EWA64_RS05820 | pdhR | 1074215..1074985 (-) | 771 | WP_039430445.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| EWA64_RS05825 | ampD | 1075395..1075964 (-) | 570 | WP_061895191.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| EWA64_RS05830 | nadC | 1076057..1076944 (+) | 888 | WP_061895190.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| EWA64_RS05835 | - | 1077160..1077624 (+) | 465 | WP_061895189.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| EWA64_RS05840 | pilB | 1077625..1079313 (+) | 1689 | WP_061895188.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| EWA64_RS05845 | pilC | 1079335..1080561 (+) | 1227 | WP_061895187.1 | type II secretion system F family protein | Machinery gene |
| EWA64_RS05850 | pilD | 1080701..1081570 (+) | 870 | WP_061895186.1 | A24 family peptidase | Machinery gene |
| EWA64_RS05855 | coaE | 1081572..1082180 (+) | 609 | WP_061895185.1 | dephospho-CoA kinase | - |
| EWA64_RS05860 | zapD | 1082213..1082953 (+) | 741 | WP_039430452.1 | cell division protein ZapD | - |
| EWA64_RS05865 | yacG | 1083038..1083232 (+) | 195 | WP_061895184.1 | DNA gyrase inhibitor YacG | - |
| EWA64_RS05870 | rplS | 1083667..1084020 (-) | 354 | WP_039430454.1 | 50S ribosomal protein L19 | - |
Sequence
Protein
Download Length: 562 a.a. Molecular weight: 62142.28 Da Isoelectric Point: 6.2967
>NTDB_id=344979 EWA64_RS05840 WP_061895188.1 1077625..1079313(+) (pilB) [Vibrio cidicii strain 2423-01]
MLTSLTTVLRQATLLSPTQEQACLEHLNASGASAPEVLLQLGFFQAEELTEHLSVLFDLPPVELSHYGYQSVCNQLGLRE
LITRHQALPLQKNRSALILASADPTNLQAEDDFRFATGLQVEMVLADVKQLQGAIRRLYGRTLSQDNRSGLKEIHQDELA
NLVDVAADEVDNIEDLSQDSSPVSRFINQILLDAVRKGASDIHFEPYEAMYRVRLRCDGILVEVQQPPSHLSRRLSARLK
ILAKLDIAERRLPQDGRIKLKLNQSTAIDMRVSTLPTLFGEKIVLRLLDSSSSNLDIDKLGYSETQKQLYLNALRKPQGM
ILMTGPTGSGKTVSLYTGLNLLNRPEVNISTAEDPVEINLPGINQVQVQPKIGFGFAQALRSFLRQDPDIVMVGEIRDLE
TAEIAIKAAQTGHLVLSTLHTNSAAETIVRLSNMGIASFNLASSLSLIIAQRLARRLCRHCKQPQHLSPALQELGLSQQD
GLYRANPQGCNECNQGYSGRVGIYEVMPFDDAMAEALIKGASVQSLEMLARKNGMLTLRESGLEKVKQGITSIEELQRVL
YL
MLTSLTTVLRQATLLSPTQEQACLEHLNASGASAPEVLLQLGFFQAEELTEHLSVLFDLPPVELSHYGYQSVCNQLGLRE
LITRHQALPLQKNRSALILASADPTNLQAEDDFRFATGLQVEMVLADVKQLQGAIRRLYGRTLSQDNRSGLKEIHQDELA
NLVDVAADEVDNIEDLSQDSSPVSRFINQILLDAVRKGASDIHFEPYEAMYRVRLRCDGILVEVQQPPSHLSRRLSARLK
ILAKLDIAERRLPQDGRIKLKLNQSTAIDMRVSTLPTLFGEKIVLRLLDSSSSNLDIDKLGYSETQKQLYLNALRKPQGM
ILMTGPTGSGKTVSLYTGLNLLNRPEVNISTAEDPVEINLPGINQVQVQPKIGFGFAQALRSFLRQDPDIVMVGEIRDLE
TAEIAIKAAQTGHLVLSTLHTNSAAETIVRLSNMGIASFNLASSLSLIIAQRLARRLCRHCKQPQHLSPALQELGLSQQD
GLYRANPQGCNECNQGYSGRVGIYEVMPFDDAMAEALIKGASVQSLEMLARKNGMLTLRESGLEKVKQGITSIEELQRVL
YL
Nucleotide
Download Length: 1689 bp
>NTDB_id=344979 EWA64_RS05840 WP_061895188.1 1077625..1079313(+) (pilB) [Vibrio cidicii strain 2423-01]
ATGCTTACCAGTCTTACTACTGTTCTGCGCCAAGCGACTCTACTTAGCCCAACGCAAGAGCAAGCCTGTTTGGAACACCT
CAACGCTTCCGGTGCCAGTGCACCGGAAGTGTTGTTGCAACTGGGCTTTTTCCAAGCCGAAGAACTGACTGAACATCTCA
GCGTGCTATTTGATTTGCCGCCCGTCGAGCTTAGCCACTATGGCTACCAAAGCGTGTGCAACCAACTGGGGTTGCGCGAG
CTGATTACCCGCCACCAAGCCCTGCCGCTACAAAAAAATCGCTCAGCGCTGATTCTCGCCAGTGCCGACCCAACCAATTT
ACAGGCCGAAGATGACTTTCGCTTTGCCACAGGGCTGCAAGTGGAAATGGTGTTGGCCGATGTTAAGCAGTTGCAAGGGG
CAATACGTCGCCTATATGGCCGCACCCTTTCTCAAGATAACCGCTCAGGACTGAAAGAGATCCACCAAGATGAGCTGGCC
AACTTAGTTGATGTGGCAGCCGATGAAGTCGACAATATTGAAGATCTCAGCCAAGACAGCTCCCCCGTCAGCCGTTTTAT
CAACCAGATCTTACTCGATGCGGTGCGTAAAGGCGCATCCGATATTCACTTTGAACCCTATGAAGCGATGTATCGCGTGC
GTTTGCGCTGCGATGGTATTTTGGTCGAAGTGCAGCAGCCACCGAGCCATTTGAGCCGTCGACTCTCGGCACGGCTTAAG
ATTCTCGCTAAGCTGGATATTGCCGAGCGGCGTCTACCGCAAGATGGCCGCATCAAACTCAAGCTGAACCAAAGCACCGC
GATTGATATGCGCGTTTCTACCCTACCGACGCTGTTTGGAGAGAAAATCGTGTTGCGCCTGCTCGACAGTTCCAGCAGCA
ACTTGGACATTGATAAACTCGGCTACAGCGAAACGCAAAAGCAGCTCTATCTCAACGCGCTGCGCAAACCGCAAGGGATG
ATCTTGATGACGGGCCCAACCGGCAGCGGCAAAACCGTTTCACTCTATACCGGTTTAAACCTACTCAATCGCCCTGAGGT
CAACATCTCTACCGCCGAAGATCCGGTAGAGATTAACTTGCCCGGCATTAACCAAGTGCAAGTGCAGCCAAAAATCGGCT
TTGGCTTTGCGCAGGCACTGCGATCATTTTTACGTCAAGACCCCGATATTGTCATGGTCGGTGAAATTCGCGATTTGGAA
ACCGCCGAAATAGCCATTAAAGCCGCGCAAACGGGGCATTTGGTGCTATCCACCCTACATACCAACTCGGCCGCAGAGAC
CATAGTACGCCTATCGAACATGGGCATTGCCAGCTTCAACCTCGCTTCTTCATTGAGCTTAATTATCGCTCAGCGCCTAG
CCCGCCGTTTGTGTCGCCATTGCAAGCAGCCACAACACCTTTCACCAGCATTACAAGAGCTAGGGTTAAGCCAGCAGGAT
GGGTTGTATCGTGCCAATCCTCAAGGGTGTAACGAATGCAATCAAGGGTATTCAGGGCGCGTCGGCATCTACGAAGTGAT
GCCCTTTGACGATGCCATGGCCGAGGCGCTAATTAAAGGAGCCTCAGTACAAAGCTTGGAAATGCTCGCCAGAAAAAATG
GCATGCTGACGCTTCGAGAATCTGGGCTAGAAAAGGTCAAGCAAGGTATCACCAGCATTGAAGAGCTGCAACGCGTGCTC
TACCTGTAA
ATGCTTACCAGTCTTACTACTGTTCTGCGCCAAGCGACTCTACTTAGCCCAACGCAAGAGCAAGCCTGTTTGGAACACCT
CAACGCTTCCGGTGCCAGTGCACCGGAAGTGTTGTTGCAACTGGGCTTTTTCCAAGCCGAAGAACTGACTGAACATCTCA
GCGTGCTATTTGATTTGCCGCCCGTCGAGCTTAGCCACTATGGCTACCAAAGCGTGTGCAACCAACTGGGGTTGCGCGAG
CTGATTACCCGCCACCAAGCCCTGCCGCTACAAAAAAATCGCTCAGCGCTGATTCTCGCCAGTGCCGACCCAACCAATTT
ACAGGCCGAAGATGACTTTCGCTTTGCCACAGGGCTGCAAGTGGAAATGGTGTTGGCCGATGTTAAGCAGTTGCAAGGGG
CAATACGTCGCCTATATGGCCGCACCCTTTCTCAAGATAACCGCTCAGGACTGAAAGAGATCCACCAAGATGAGCTGGCC
AACTTAGTTGATGTGGCAGCCGATGAAGTCGACAATATTGAAGATCTCAGCCAAGACAGCTCCCCCGTCAGCCGTTTTAT
CAACCAGATCTTACTCGATGCGGTGCGTAAAGGCGCATCCGATATTCACTTTGAACCCTATGAAGCGATGTATCGCGTGC
GTTTGCGCTGCGATGGTATTTTGGTCGAAGTGCAGCAGCCACCGAGCCATTTGAGCCGTCGACTCTCGGCACGGCTTAAG
ATTCTCGCTAAGCTGGATATTGCCGAGCGGCGTCTACCGCAAGATGGCCGCATCAAACTCAAGCTGAACCAAAGCACCGC
GATTGATATGCGCGTTTCTACCCTACCGACGCTGTTTGGAGAGAAAATCGTGTTGCGCCTGCTCGACAGTTCCAGCAGCA
ACTTGGACATTGATAAACTCGGCTACAGCGAAACGCAAAAGCAGCTCTATCTCAACGCGCTGCGCAAACCGCAAGGGATG
ATCTTGATGACGGGCCCAACCGGCAGCGGCAAAACCGTTTCACTCTATACCGGTTTAAACCTACTCAATCGCCCTGAGGT
CAACATCTCTACCGCCGAAGATCCGGTAGAGATTAACTTGCCCGGCATTAACCAAGTGCAAGTGCAGCCAAAAATCGGCT
TTGGCTTTGCGCAGGCACTGCGATCATTTTTACGTCAAGACCCCGATATTGTCATGGTCGGTGAAATTCGCGATTTGGAA
ACCGCCGAAATAGCCATTAAAGCCGCGCAAACGGGGCATTTGGTGCTATCCACCCTACATACCAACTCGGCCGCAGAGAC
CATAGTACGCCTATCGAACATGGGCATTGCCAGCTTCAACCTCGCTTCTTCATTGAGCTTAATTATCGCTCAGCGCCTAG
CCCGCCGTTTGTGTCGCCATTGCAAGCAGCCACAACACCTTTCACCAGCATTACAAGAGCTAGGGTTAAGCCAGCAGGAT
GGGTTGTATCGTGCCAATCCTCAAGGGTGTAACGAATGCAATCAAGGGTATTCAGGGCGCGTCGGCATCTACGAAGTGAT
GCCCTTTGACGATGCCATGGCCGAGGCGCTAATTAAAGGAGCCTCAGTACAAAGCTTGGAAATGCTCGCCAGAAAAAATG
GCATGCTGACGCTTCGAGAATCTGGGCTAGAAAAGGTCAAGCAAGGTATCACCAGCATTGAAGAGCTGCAACGCGTGCTC
TACCTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
77.758 |
100 |
0.778 |
| pilB | Vibrio campbellii strain DS40M4 |
76.868 |
100 |
0.769 |
| pilB | Vibrio cholerae strain A1552 |
72.469 |
100 |
0.726 |
| pilB | Acinetobacter baumannii D1279779 |
52.326 |
91.815 |
0.48 |
| pilB | Legionella pneumophila strain ERS1305867 |
52.047 |
91.281 |
0.475 |
| pilB | Acinetobacter baylyi ADP1 |
52.784 |
86.299 |
0.456 |
| pilF | Neisseria gonorrhoeae MS11 |
46.279 |
98.043 |
0.454 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
38.245 |
100 |
0.411 |
| pilF | Thermus thermophilus HB27 |
38.121 |
100 |
0.383 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
37.057 |
100 |
0.372 |
| pilB | Haemophilus influenzae 86-028NP |
42.623 |
86.833 |
0.37 |
| pilB | Haemophilus influenzae Rd KW20 |
42.975 |
86.121 |
0.37 |