Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EPB59_RS01440 Genome accession   NZ_CP035686
Coordinates   296719..297945 (-) Length   408 a.a.
NCBI ID   WP_055051503.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1169     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 291719..302945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB59_RS01415 parC 291721..294006 (+) 2286 WP_154171380.1 DNA topoisomerase IV subunit A -
  EPB59_RS01420 yacG 294055..294252 (-) 198 WP_154171381.1 DNA gyrase inhibitor YacG -
  EPB59_RS01425 zapD 294409..295149 (-) 741 WP_154171382.1 cell division protein ZapD -
  EPB59_RS01430 coaE 295181..295789 (-) 609 WP_195707027.1 dephospho-CoA kinase -
  EPB59_RS01435 pilD 295786..296661 (-) 876 WP_154171384.1 A24 family peptidase Machinery gene
  EPB59_RS01440 pilC 296719..297945 (-) 1227 WP_055051503.1 type II secretion system F family protein Machinery gene
  EPB59_RS01445 pilB 297999..299687 (-) 1689 WP_154171385.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EPB59_RS01450 pilA 299695..300150 (-) 456 WP_154171386.1 pilin Machinery gene
  EPB59_RS01455 nadC 300395..301285 (-) 891 WP_055065163.1 carboxylating nicotinate-nucleotide diphosphorylase -
  EPB59_RS01460 ampD 301573..302124 (+) 552 WP_154171387.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  EPB59_RS01465 fldB 302188..302706 (-) 519 WP_095467139.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45149.50 Da        Isoelectric Point: 10.4232

>NTDB_id=343637 EPB59_RS01440 WP_055051503.1 296719..297945(-) (pilC) [Vibrio metoecus strain 2011V-1169]
MKATKHVALKNYRWRGINSNGKKVSGQMLALNELEVRDKLKEQHIQIKKLKKGSVSLLSRITHRVKTKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWVLIALGAALFG
LKTLRKNSLQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVHRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=343637 EPB59_RS01440 WP_055051503.1 296719..297945(-) (pilC) [Vibrio metoecus strain 2011V-1169]
ATGAAAGCAACCAAACATGTAGCCTTAAAAAACTATCGCTGGAGAGGCATCAACAGCAACGGCAAAAAAGTGTCGGGCCA
AATGCTTGCCTTAAACGAATTGGAGGTTCGCGATAAGCTCAAAGAGCAGCATATCCAAATCAAAAAACTCAAGAAAGGCA
GCGTTTCTCTCCTCTCTCGCATTACCCATCGTGTCAAAACGAAAGACATCACAATTCTCACCCGCCAATTAGCCACCATG
CTGACCACGGGCGTACCCATTGTGCAAGCCCTCAAACTGGTGGGCGATAATCATCGCAAAGCTGAAATGAAATCGATCTT
GGCACAAATCACCAAAGGCGTTGAAGCAGGCACGCCGCTTTCTAAGGCGATGCGCACTGCCAGCGCCCATTTTGATACCT
TGTATGTCGACTTAGTGGAAACTGGAGAGATGTCCGGTAACCTACCTGAAGTGTTTGAACGTTTGGCCACCTATCGCGAG
AAAAGCGAACAGCTACGCGCCAAAGTGATCAAAGCTCTCATCTACCCGAGTATGGTGGTGTTGGTGGCTCTTGGGGTTTC
CTACTTGATGTTGACCATGGTGATCCCAGAGTTTGAAAGCATGTTTAAAGGCTTTGGCGCCGAGCTGCCTTGGTTTACAC
AGCAAGTGCTGAAACTCTCACACTGGGTGCAGGCTTATAGTTTATGGGTGTTGATCGCTCTCGGTGCAGCACTGTTTGGA
CTAAAAACCCTGCGCAAAAACTCGTTACAGATCCGATTAAAAACCAGTCGCTTGGGGCTGAAATTTCCGATTATTGGCAA
TGTGCTCGCTAAAGCGTCCATCGCCAAATTCAGCCGCACGCTTGCCACCAGCTTTGCAGCGGGGATTCCGATCCTCGCCA
GTTTAAAAACCACTGCCAAAACTTCCGGCAATGTGCACTTTGAAACTGCGATTAATGAAGTACATCGTGATACTGCCGCC
GGTATGCCGATGTACATTGCCATGCGCAATACCGAAGCTTTCCCTGAGATGGTGCTGCAAATGGTGATGATCGGTGAAGA
GTCTGGGCAATTAGATGACATGCTCAACAAGGTGGCGACCATCTATGAATTTGAAGTCGATAACACGGTCGATAACTTGG
GCAAGATTCTTGAACCACTGATCATCGTCTTTCTTGGGACAGTCGTGGGTGGCTTGGTAGTAGCGATGTACTTACCTATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

94.853

100

0.949
  pilC Vibrio campbellii strain DS40M4

73.5

98.039

0.721
  pilC Acinetobacter baumannii D1279779

42.402

100

0.424
  pilC Pseudomonas stutzeri DSM 10701

42.786

98.529

0.422
  pilC Acinetobacter baylyi ADP1

41.422

100

0.414
  pilG Neisseria gonorrhoeae MS11

42.04

98.529

0.414
  pilC Legionella pneumophila strain ERS1305867

42.105

97.794

0.412
  pilG Neisseria meningitidis 44/76-A

41.542

98.529

0.409

Multiple sequence alignment