Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ET951_RS07900 | Genome accession | NZ_CP035682 |
| Coordinates | 1677721..1678947 (-) | Length | 408 a.a. |
| NCBI ID | WP_000648442.1 | Uniprot ID | - |
| Organism | Vibrio mimicus strain 2011V-1073 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1672721..1683947
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ET951_RS07880 | yacG | 1674958..1675155 (-) | 198 | WP_000162865.1 | DNA gyrase inhibitor YacG | - |
| ET951_RS07885 | zapD | 1675406..1676146 (-) | 741 | WP_070381366.1 | cell division protein ZapD | - |
| ET951_RS07890 | coaE | 1676178..1676786 (-) | 609 | WP_192927859.1 | dephospho-CoA kinase | - |
| ET951_RS07895 | pilD | 1676783..1677658 (-) | 876 | WP_154113250.1 | prepilin peptidase | Machinery gene |
| ET951_RS07900 | pilC | 1677721..1678947 (-) | 1227 | WP_000648442.1 | type II secretion system F family protein | Machinery gene |
| ET951_RS07905 | pilB | 1678986..1680674 (-) | 1689 | WP_154113251.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ET951_RS07910 | pilA | 1680674..1681123 (-) | 450 | WP_000649327.1 | pilin | Machinery gene |
| ET951_RS07915 | nadC | 1681368..1682258 (-) | 891 | WP_005514794.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ET951_RS07920 | ampD | 1682424..1682972 (+) | 549 | WP_154113252.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ET951_RS07925 | fldB | 1683028..1683546 (-) | 519 | WP_154113253.1 | flavodoxin FldB | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 45151.48 Da Isoelectric Point: 10.3424
>NTDB_id=343607 ET951_RS07900 WP_000648442.1 1677721..1678947(-) (pilC) [Vibrio mimicus strain 2011V-1073]
MKATQNVALKNYRWKGINSNGKKVSGQMLALTELEVRDKLKEQHIQIKKIKKGSVSVFARITHRVKGKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAMRTASTHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFVAIVAMVLG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG
MKATQNVALKNYRWKGINSNGKKVSGQMLALTELEVRDKLKEQHIQIKKIKKGSVSVFARITHRVKGKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAMRTASTHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFVAIVAMVLG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG
Nucleotide
Download Length: 1227 bp
>NTDB_id=343607 ET951_RS07900 WP_000648442.1 1677721..1678947(-) (pilC) [Vibrio mimicus strain 2011V-1073]
ATGAAAGCGACCCAAAATGTAGCCTTGAAAAACTATCGCTGGAAAGGTATCAACAGCAACGGAAAAAAAGTCTCCGGACA
GATGTTGGCGCTAACCGAATTAGAGGTGCGCGACAAACTAAAAGAGCAGCACATTCAAATCAAAAAAATCAAAAAAGGCA
GTGTTTCCGTGTTTGCGCGTATTACTCATCGCGTCAAAGGCAAAGACATCACCATTCTCACTCGACAATTGGCCACCATG
CTCACTACTGGTGTACCCATTGTGCAAGCGCTCAAACTGGTGGGAGATAACCATAGAAAGGCGGAGATGAAATCGATCTT
GGCACAAATCACCAAAGGCGTTGAAGCAGGCACACCACTTTCAAAAGCCATGCGCACTGCGAGCACCCATTTCGATACTT
TGTATGTCGATCTGGTGGAAACGGGAGAAATGTCCGGCAATCTGCCCGAAGTATTTGAACGCTTGGCTACCTATCGTGAG
AAAAGTGAACAACTTCGCGCCAAGGTGATCAAAGCATTGATCTACCCAAGCATGGTGGTACTGGTGGCTTTAGGGGTTTC
TTACCTGATGCTCACCATGGTTATCCCTGAATTTGAATCCATGTTTAAAGGTTTTGGGGCGGAGCTTCCTTGGTTTACTC
AACAAGTGTTAAAACTCTCGCACTGGGTTCAGGCATACAGTCTATGGGCATTTGTGGCTATCGTAGCCATGGTACTTGGG
CTAAAAGCGCTGCGTAAAAACTCTTTTCAGATTCGCTTAAAAACCAGTCGGTTAGGGTTGAAATTTCCAATTATCGGCAA
TGTGCTGGCTAAGGCATCGATCGCTAAATTCAGCCGAACTCTCGCCACCAGCTTTGCAGCGGGTATTCCTATCCTCGCTA
GTTTAAAAACCACCGCCAAAACTTCTGGCAATGTGCACTTTGAAACTGCAATCAACGAAGTATACCGAGATACTGCCGCG
GGTATGCCCATGTATATTGCGATGCGCAATACCGAAGCCTTTCCCGAGATGGTGCTACAAATGGTGATGATAGGTGAAGA
ATCAGGCCAATTGGATGACATGCTCAACAAGGTCGCCACCATCTACGAATTTGAAGTCGATAACACAGTCGATAACTTAG
GTAAAATCCTTGAACCCTTGATTATCGTATTTCTTGGTACTGTTGTGGGTGGCTTGGTCGTGGCTATGTATTTGCCTATC
TTTAACTTAATGAGTGTATTGGGTTAG
ATGAAAGCGACCCAAAATGTAGCCTTGAAAAACTATCGCTGGAAAGGTATCAACAGCAACGGAAAAAAAGTCTCCGGACA
GATGTTGGCGCTAACCGAATTAGAGGTGCGCGACAAACTAAAAGAGCAGCACATTCAAATCAAAAAAATCAAAAAAGGCA
GTGTTTCCGTGTTTGCGCGTATTACTCATCGCGTCAAAGGCAAAGACATCACCATTCTCACTCGACAATTGGCCACCATG
CTCACTACTGGTGTACCCATTGTGCAAGCGCTCAAACTGGTGGGAGATAACCATAGAAAGGCGGAGATGAAATCGATCTT
GGCACAAATCACCAAAGGCGTTGAAGCAGGCACACCACTTTCAAAAGCCATGCGCACTGCGAGCACCCATTTCGATACTT
TGTATGTCGATCTGGTGGAAACGGGAGAAATGTCCGGCAATCTGCCCGAAGTATTTGAACGCTTGGCTACCTATCGTGAG
AAAAGTGAACAACTTCGCGCCAAGGTGATCAAAGCATTGATCTACCCAAGCATGGTGGTACTGGTGGCTTTAGGGGTTTC
TTACCTGATGCTCACCATGGTTATCCCTGAATTTGAATCCATGTTTAAAGGTTTTGGGGCGGAGCTTCCTTGGTTTACTC
AACAAGTGTTAAAACTCTCGCACTGGGTTCAGGCATACAGTCTATGGGCATTTGTGGCTATCGTAGCCATGGTACTTGGG
CTAAAAGCGCTGCGTAAAAACTCTTTTCAGATTCGCTTAAAAACCAGTCGGTTAGGGTTGAAATTTCCAATTATCGGCAA
TGTGCTGGCTAAGGCATCGATCGCTAAATTCAGCCGAACTCTCGCCACCAGCTTTGCAGCGGGTATTCCTATCCTCGCTA
GTTTAAAAACCACCGCCAAAACTTCTGGCAATGTGCACTTTGAAACTGCAATCAACGAAGTATACCGAGATACTGCCGCG
GGTATGCCCATGTATATTGCGATGCGCAATACCGAAGCCTTTCCCGAGATGGTGCTACAAATGGTGATGATAGGTGAAGA
ATCAGGCCAATTGGATGACATGCTCAACAAGGTCGCCACCATCTACGAATTTGAAGTCGATAACACAGTCGATAACTTAG
GTAAAATCCTTGAACCCTTGATTATCGTATTTCTTGGTACTGTTGTGGGTGGCTTGGTCGTGGCTATGTATTTGCCTATC
TTTAACTTAATGAGTGTATTGGGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Vibrio cholerae strain A1552 |
95.343 |
100 |
0.953 |
| pilC | Vibrio campbellii strain DS40M4 |
74.5 |
98.039 |
0.73 |
| pilC | Pseudomonas stutzeri DSM 10701 |
42.04 |
98.529 |
0.414 |
| pilC | Acinetobacter baumannii D1279779 |
42 |
98.039 |
0.412 |
| pilC | Acinetobacter baylyi ADP1 |
41.176 |
100 |
0.412 |
| pilC | Legionella pneumophila strain ERS1305867 |
42.065 |
97.304 |
0.409 |
| pilG | Neisseria gonorrhoeae MS11 |
41.103 |
97.794 |
0.402 |
| pilG | Neisseria meningitidis 44/76-A |
40.602 |
97.794 |
0.397 |