Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ET951_RS07895 Genome accession   NZ_CP035682
Coordinates   1676783..1677658 (-) Length   291 a.a.
NCBI ID   WP_154113250.1    Uniprot ID   -
Organism   Vibrio mimicus strain 2011V-1073     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1671783..1682658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET951_RS07875 parC 1672624..1674909 (+) 2286 WP_154113248.1 DNA topoisomerase IV subunit A -
  ET951_RS07880 yacG 1674958..1675155 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  ET951_RS07885 zapD 1675406..1676146 (-) 741 WP_070381366.1 cell division protein ZapD -
  ET951_RS07890 coaE 1676178..1676786 (-) 609 WP_192927859.1 dephospho-CoA kinase -
  ET951_RS07895 pilD 1676783..1677658 (-) 876 WP_154113250.1 prepilin peptidase Machinery gene
  ET951_RS07900 pilC 1677721..1678947 (-) 1227 WP_000648442.1 type II secretion system F family protein Machinery gene
  ET951_RS07905 pilB 1678986..1680674 (-) 1689 WP_154113251.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ET951_RS07910 pilA 1680674..1681123 (-) 450 WP_000649327.1 pilin Machinery gene
  ET951_RS07915 nadC 1681368..1682258 (-) 891 WP_005514794.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32264.52 Da        Isoelectric Point: 7.0559

>NTDB_id=343606 ET951_RS07895 WP_154113250.1 1676783..1677658(-) (pilD) [Vibrio mimicus strain 2011V-1073]
MELFFYYPWLFPVLATLFGLIVGSFLNVVIYRLPKIMEREWRADCAASFPEYGISPPEGQLTLSLPRSTCPHCQTPIRVI
DNIPVVSWLALRGKCSHCKAPISARYPLIELFTALVSLMVSTQLSFSPFAVAALLFSYVLIAATFIDLDTMLLPDQLTLP
LLWGGIALALFGLSPVPLTDAVIGAMVGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPVIVLLSSVVGL
LFGLIQLRLQKQGIDKAFPFGPYLAIAGWIALLWGNMVIDWYLTSWVGQPL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=343606 ET951_RS07895 WP_154113250.1 1676783..1677658(-) (pilD) [Vibrio mimicus strain 2011V-1073]
ATGGAACTGTTTTTCTACTACCCTTGGCTGTTTCCCGTTTTAGCTACCTTATTTGGGCTTATAGTCGGCAGCTTTCTTAA
TGTGGTGATTTATCGCTTGCCGAAAATCATGGAGCGTGAGTGGCGCGCTGACTGTGCAGCCAGCTTTCCGGAATACGGAA
TAAGCCCACCAGAAGGCCAACTTACGCTCAGTTTGCCACGCTCAACCTGCCCACATTGCCAAACACCCATTCGAGTGATT
GATAATATTCCGGTAGTCAGTTGGCTTGCTCTGCGAGGAAAATGCTCACACTGCAAAGCACCAATCAGTGCCCGCTATCC
CTTAATTGAGTTATTCACCGCTTTAGTGAGTTTAATGGTTTCTACTCAGCTCAGTTTTAGCCCTTTTGCGGTTGCTGCAC
TCCTGTTTAGTTATGTACTGATTGCTGCTACGTTTATCGACCTCGATACTATGCTGTTGCCTGACCAGCTCACTTTGCCT
CTGCTGTGGGGTGGTATTGCGCTAGCTCTGTTTGGACTGTCCCCGGTGCCGCTTACCGATGCAGTCATCGGTGCTATGGT
GGGTTATCTTTCATTATGGTCGATTTACTGGTTATTTAAATTACTAACCGGTAAAGAAGGCATGGGTTATGGAGATTTCA
AATTGCTCGCTGCTCTTGGAGCTTGGCTGGGTTGGCAACAGTTGCCAGTCATCGTGCTGCTCTCGTCTGTGGTTGGTCTT
CTCTTCGGTTTAATTCAGTTACGCCTACAGAAACAAGGCATAGATAAAGCTTTCCCATTTGGCCCATATTTAGCTATTGC
TGGGTGGATTGCCTTACTATGGGGCAATATGGTGATTGACTGGTACTTAACCTCTTGGGTAGGGCAACCACTATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-122)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

87.285

100

0.873
  pilD Vibrio campbellii strain DS40M4

74.306

98.969

0.735
  pilD Acinetobacter baumannii D1279779

52.941

93.471

0.495
  pilD Acinetobacter nosocomialis M2

52.206

93.471

0.488
  pilD Neisseria gonorrhoeae MS11

47.08

94.158

0.443

Multiple sequence alignment