Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | EVU95_RS05700 | Genome accession | NZ_CP035643 |
| Coordinates | 1207344..1207661 (-) | Length | 105 a.a. |
| NCBI ID | WP_001831271.1 | Uniprot ID | A0A9Q5JKE9 |
| Organism | Staphylococcus epidermidis strain E73 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1202344..1212661
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EVU95_RS05670 (EVU95_05895) | gcvPA | 1202869..1204215 (-) | 1347 | WP_002456181.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
| EVU95_RS05675 (EVU95_05900) | gcvT | 1204242..1205327 (-) | 1086 | WP_107362597.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| EVU95_RS05680 (EVU95_05905) | - | 1205545..1206057 (-) | 513 | WP_002440040.1 | shikimate kinase | - |
| EVU95_RS05685 (EVU95_05915) | - | 1206222..1206713 (-) | 492 | WP_002440043.1 | competence type IV pilus minor pilin ComGF | - |
| EVU95_RS05690 (EVU95_05920) | - | 1206637..1206930 (-) | 294 | WP_001831116.1 | hypothetical protein | - |
| EVU95_RS05695 (EVU95_05925) | comGD | 1206917..1207354 (-) | 438 | WP_001831025.1 | competence type IV pilus minor pilin ComGD | - |
| EVU95_RS05700 (EVU95_05930) | comGC | 1207344..1207661 (-) | 318 | WP_001831271.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EVU95_RS05705 (EVU95_05935) | comGB | 1207679..1208746 (-) | 1068 | WP_001831131.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| EVU95_RS05710 (EVU95_05940) | comGA | 1208718..1209692 (-) | 975 | WP_001831109.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EVU95_RS05715 (EVU95_05945) | - | 1209749..1210372 (-) | 624 | WP_001831016.1 | MBL fold metallo-hydrolase | - |
| EVU95_RS05720 (EVU95_05950) | - | 1210372..1210698 (-) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| EVU95_RS05725 (EVU95_05955) | - | 1210698..1211684 (-) | 987 | WP_001831113.1 | ROK family glucokinase | - |
| EVU95_RS05730 (EVU95_05960) | - | 1211684..1211884 (-) | 201 | WP_001831138.1 | YqgQ family protein | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11491.58 Da Isoelectric Point: 9.7429
>NTDB_id=343303 EVU95_RS05700 WP_001831271.1 1207344..1207661(-) (comGC) [Staphylococcus epidermidis strain E73]
MKTLKLLKKTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNIDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN
MKTLKLLKKTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNIDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN
Nucleotide
Download Length: 318 bp
>NTDB_id=343303 EVU95_RS05700 WP_001831271.1 1207344..1207661(-) (comGC) [Staphylococcus epidermidis strain E73]
ATGAAAACATTGAAATTATTGAAAAAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATAAGTTT
ATTGTTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACATAATCGCAACCCTTCTAATATTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATTAGTATTGCAAATGGAGAAGCAGTTGCCAATTAA
ATGAAAACATTGAAATTATTGAAAAAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATAAGTTT
ATTGTTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACATAATCGCAACCCTTCTAATATTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATTAGTATTGCAAATGGAGAAGCAGTTGCCAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
87.255 |
97.143 |
0.848 |
| comGC | Staphylococcus aureus N315 |
87.255 |
97.143 |
0.848 |
| comGC/cglC | Streptococcus mitis SK321 |
44.66 |
98.095 |
0.438 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae D39 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae R6 |
44.681 |
89.524 |
0.4 |
| comYC | Streptococcus mutans UA159 |
47.674 |
81.905 |
0.39 |
| comYC | Streptococcus mutans UA140 |
47.674 |
81.905 |
0.39 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
46.512 |
81.905 |
0.381 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
47.561 |
78.095 |
0.371 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
50 |
74.286 |
0.371 |
| comYC | Streptococcus suis isolate S10 |
48.718 |
74.286 |
0.362 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
86.667 |
0.362 |