Detailed information NTG0342966

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: EU243_RS02440
• Genome accession: NZ_CP035533
• Coordinates: 473443..474591 (-)
• Length: 382 a.a.
• NCBI ID: WP_014304340.1
• Uniprot ID: I2C1C2
• Organism: Bacillus velezensis strain DTU001
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 468443..479591

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EU243_RS02410 (EU243_02425)	-	468578..469336 (-)	759	WP_003156330.1	ABC transporter ATP-binding protein	-
EU243_RS02415 (EU243_02430)	-	469330..470277 (-)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
EU243_RS02420 (EU243_02435)	ceuB	470267..471220 (-)	954	WP_046559346.1	ABC transporter permease	Machinery gene
EU243_RS02425 (EU243_02440)	-	471635..472999 (+)	1365	WP_046559345.1	aspartate kinase	-
EU243_RS02430 (EU243_02445)	-	473079..473189 (+)	111	WP_369719092.1	YjcZ family sporulation protein	-
EU243_RS02435 (EU243_02450)	phrC	473340..473459 (-)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
EU243_RS02440 (EU243_02455)	rapC	473443..474591 (-)	1149	WP_014304340.1	Rap family tetratricopeptide repeat protein	Regulator
EU243_RS02445 (EU243_02460)	-	474744..476177 (-)	1434	WP_161625271.1	sensor histidine kinase	-
EU243_RS02450 (EU243_02465)	-	476164..476847 (-)	684	WP_003156341.1	response regulator transcription factor	-
EU243_RS02455 (EU243_02470)	-	477060..478496 (+)	1437	WP_014304338.1	ABC transporter permease	-
EU243_RS02460 (EU243_02475)	-	478511..479194 (+)	684	WP_014304337.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45494.75 Da
• Isoelectric Point: 4.9939

>NTDB_id=342966 EU243_RS02440 WP_014304340.1 473443..474591(-) (rapC) [Bacillus velezensis strain DTU001]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=342966 EU243_RS02440 WP_014304340.1 473443..474591(-) (rapC) [Bacillus velezensis strain DTU001]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTCGAGCAGGACACATATAACGTCAGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

3D structure

• AlphaFold DB: I2C1C2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568