Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ETT44_RS00740 Genome accession   NZ_CP035455
Coordinates   112149..112544 (+) Length   131 a.a.
NCBI ID   WP_136022018.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm197     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107149..117544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT44_RS00705 (ETT44_00705) - 108015..108323 (+) 309 WP_011284425.1 hypothetical protein -
  ETT44_RS00710 (ETT44_00710) proC 108406..109176 (-) 771 WP_002992745.1 pyrroline-5-carboxylate reductase -
  ETT44_RS00715 (ETT44_00715) pepA 109224..110291 (-) 1068 WP_136022020.1 glutamyl aminopeptidase -
  ETT44_RS00725 (ETT44_00725) - 110756..111040 (+) 285 WP_136022019.1 DUF4651 domain-containing protein -
  ETT44_RS00730 (ETT44_00730) - 111037..111354 (+) 318 WP_002987805.1 thioredoxin family protein -
  ETT44_RS00735 (ETT44_00735) ytpR 111372..111998 (+) 627 WP_032460340.1 YtpR family tRNA-binding protein -
  ETT44_RS00740 (ETT44_00740) ssbA 112149..112544 (+) 396 WP_136022018.1 single-stranded DNA-binding protein Machinery gene
  ETT44_RS00745 (ETT44_00745) - 112804..113445 (-) 642 WP_136022017.1 deoxynucleoside kinase -
  ETT44_RS00750 (ETT44_00750) dusB 113465..114442 (-) 978 WP_003053951.1 tRNA dihydrouridine synthase DusB -
  ETT44_RS00755 (ETT44_00755) hslO 114429..115301 (-) 873 WP_012766459.1 Hsp33 family molecular chaperone HslO -
  ETT44_RS00760 (ETT44_00760) rofA 115448..116941 (-) 1494 WP_111681324.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14836.00 Da        Isoelectric Point: 8.0157

>NTDB_id=342498 ETT44_RS00740 WP_136022018.1 112149..112544(+) (ssbA) [Streptococcus pyogenes strain emm197]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISFVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=342498 ETT44_RS00740 WP_136022018.1 112149..112544(+) (ssbA) [Streptococcus pyogenes strain emm197]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTGGCTAAACCAGAATTGGTAAAAACTGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCGGATTTTATCTCTTTTGTTGTTT
GGGGAAAGTTAGCTGAAACCTTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

73.282

100

0.733
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment